Gene detail information of Glyur000364s00018054.1 |
Functional Annotation
Database | Orthologs | E value | Annotation |
---|---|---|---|
TAIR | AT1G50670.1 | 1.00E-103 | OTU-like cysteine protease family protein |
NR | XP_004491398.1 | 1.49E-145 | PREDICTED: ubiquitin thioesterase OTU1-like isoform X2 [Cicer arietinum] |
trEMBL | tr|I3T4E6|I3T4E6_LOTJA | 6.00E-145 | Uncharacterized protein {ECO:0000313|EMBL:AFK47388.1} |
Sequence
Transcript Sequence |
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Protein Sequence |
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Location information(JBrowse)
Scaffold | Start | End | Strand |
---|---|---|---|
Scaffold00364 | 125899 | 129840 | + |
Gene family
Gene family | subfamily |
---|---|
Ubiquitin Family | OTU |
KEGG pathway
KO | Enzyme | Enzyme ID | pathway | mapID |
---|---|---|---|---|
K13719 | OTU1, YOD1 | EC:3.1.2.- | Protein processing in endoplasmic reticulum | map04141 |
Gene OntologyNot hits found. |
Pfam domain
Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
---|---|---|---|---|---|
Glyur000364s00018054.1 | PF02338.14 | OTU | 11 | 120 | 3.30E-14 |
Expression pattern
SRA Experiment | Description | TPM |
---|---|---|
SRR1783599 | control | 11.669 |
SRR1783600 | control | 12.075 |
SRR1783602 | moderate drought stress | 8.739 |
SRR1811619 | moderate drought stress | 9.394 |
SRA Experiment | Description | TPM |
---|---|---|
DRR006519 | Root Summer glycyrrhizin high producing strain | 33.936 |
DRR006520 | Root Summer glycyrrhizin high producing strain | 37.333 |
DRR006521 | Root Winter glycyrrhizin high producing strain | 35.761 |
DRR006522 | Root Winter glycyrrhizin high producing strain | 31.763 |
DRR006523 | Root Summer glycyrrhizin low producing strain | 40.632 |
DRR006524 | Root Summer glycyrrhizin low producing strain | 39.246 |
DRR006525 | Leaf Summer glycyrrhizin high producing strain | 38.668 |
DRR006526 | Leaf Summer glycyrrhizin high producing strain | 36.950 |
SRA Experiment | Description | TPM |
---|---|---|
SRR2867873 | Salt Stress(Tissue:root) | 65.938 |
SRR2868004 | Drought Stress(Tissue:root) | 52.403 |
SRR2967015 | Control (Tissue:root) | 50.783 |
SRA Experiment | Description | TPM |
---|---|---|
SRR9715738 | Leave | 50.619 |
SRR9715740 | Leave | 62.655 |
SRR9715741 | Leave | 53.626 |
SRR9715739 | Root | 9.672 |
SRR9715742 | Root | 20.244 |
SRR9715743 | Root | 18.789 |
SRA Experiment | Description | TPM |
---|---|---|
SRR8749027 | MeJA induced 9h | 37.492 |
SRR8749028 | MeJA induced 9h | 35.383 |
SRR8749029 | MeJA induced 9h | 31.045 |
SRR8749030 | Uninduced | 54.304 |
SRR8749031 | Uninduced | 55.834 |
SRR8749032 | Uninduced | 38.324 |
SRA Experiment | Description | TPM |
---|---|---|
SRR8400026 | NaCl treatment-Root | 46.706 |
SRR8400027 | Control-Root | 47.577 |