Gene detail

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Gene detail information of Glyur000365s00022123.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT4G03280.1	1.00E-71	photosynthetic electron transfer C
NR	KHN04299.1	2.00E-112	Cytochrome b6-f complex iron-sulfur subunit, chloroplastic [Glycine soja]
COG	YP_007083197.1	4.00E-74	Rieske Fe-S protein [Pleurocapsa sp. PCC 7327]
Swissprot	tr\|Q69S39\|UCRIA_ORYSJ	3.00E-102	Cytochrome b6-f complex iron-sulfur subunit, chloroplastic (Precursor)
trEMBL	tr\|I1LUB3\|I1LUB3_SOYBN	7.00E-113	Cytochrome b6-f complex iron-sulfur subunit {ECO:0000256\|RuleBase:RU004496}

Sequence

Transcript Sequence

Protein Sequence

Location information(JBrowse)

Scaffold	Start	End	Strand
Scaffold00365	66310	67791	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K02636	petC	EC:1.10.9.1	Photosynthesis	map00195

Gene Ontology

biological_process
GO:0055114 oxidation-reduction process

cellular_component GO:0016020 membrane GO:0042651 thylakoid membrane molecular_function GO:0008121 ubiquinol-cytochrome-c reductase activity GO:0009496 plastoquinol--plastocyanin reductase activity GO:0016491 oxidoreductase activity GO:0016679 oxidoreductase activity, acting on diphenols and related substances as donors GO:0051537 2 iron, 2 sulfur cluster binding "

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000365s00022123.1	PF08802.5	CytB6-F_Fe-S	48	72	1.70E-07
Glyur000365s00022123.1	PF00355.21	Rieske	117	179	2.50E-16

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	1.763
SRR1783600	control	1.803
SRR1783602	moderate drought stress	4.905
SRR1811619	moderate drought stress	5.169

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	2.009
DRR006520	Root Summer glycyrrhizin high producing strain	1.907
DRR006521	Root Winter glycyrrhizin high producing strain	0.971
DRR006522	Root Winter glycyrrhizin high producing strain	0.735
DRR006523	Root Summer glycyrrhizin low producing strain	1.643
DRR006524	Root Summer glycyrrhizin low producing strain	1.423
DRR006525	Leaf Summer glycyrrhizin high producing strain	6.216
DRR006526	Leaf Summer glycyrrhizin high producing strain	6.327

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress(Tissue:root)	0.704
SRR2868004	Drought Stress(Tissue:root)	0.990
SRR2967015	Control (Tissue:root)	1.440

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leave	5.417
SRR9715740	Leave	9.931
SRR9715741	Leave	4.140
SRR9715739	Root	0.182
SRR9715742	Root	0.734
SRR9715743	Root	0.553

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.292
SRR8749028	MeJA induced 9h	0.714
SRR8749029	MeJA induced 9h	0.521
SRR8749030	Uninduced	0.420
SRR8749031	Uninduced	0.123
SRR8749032	Uninduced	0.708

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment-Root	2.090
SRR8400027	Control-Root	1.366