Gene detail information of Glyur000365s00022136.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT4G27310.12.00E-26B-box type zinc finger family protein
NRXP_007132601.18.81E-48hypothetical protein PHAVU_011G108800g [Phaseolus vulgaris]
Swissprottr|O23379|COL11_ARATH1.00E-09Putative zinc finger protein CONSTANS-LIKE 11
trEMBLtr|V7AH59|V7AH59_PHAVU3.00E-48Uncharacterized protein {ECO:0000313|EMBL:ESW04595.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold00365175036176292-


Gene family

Gene familysubfamily
Transcription Factors FamilyOrphans


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
----------


Gene Ontology

cellular_component

GO:0005622  intracellular


molecular_function

GO:0008270  zinc ion binding


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000365s00022136.1PF00643.19zf-B_box7501.80E-07


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control0.632
SRR1783600control0.581
SRR1783602moderate drought stress1.256
SRR1811619moderate drought stress1.511

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain2.403
DRR006520Root Summer glycyrrhizin high producing strain2.274
DRR006521Root Winter glycyrrhizin high producing strain34.467
DRR006522Root Winter glycyrrhizin high producing strain33.981
DRR006523Root Summer glycyrrhizin low producing strain1.360
DRR006524Root Summer glycyrrhizin low producing strain1.471
DRR006525Leaf Summer glycyrrhizin high producing strain1.967
DRR006526Leaf Summer glycyrrhizin high producing strain1.843

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)2.761
SRR2868004Drought Stress(Tissue:root)3.406
SRR2967015Control (Tissue:root)4.160

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave1.830
SRR9715740Leave0.390
SRR9715741Leave1.059
SRR9715739Root1.144
SRR9715742Root2.281
SRR9715743Root1.038

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h53.592
SRR8749028MeJA induced 9h56.047
SRR8749029MeJA induced 9h68.938
SRR8749030Uninduced30.647
SRR8749031Uninduced47.848
SRR8749032Uninduced83.161

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root3.130
SRR8400027Control-Root2.456

© 2021 Resource Institute for Chinese & Ethnic Materia Medica ,Guizhou University of Traditional Chinese Medicine
State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved