Gene detail information of Glyur000366s00019239.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT3G23790.15.00E-175AMP-dependent synthetase and ligase family protein
NRAET04094.20long-chain-fatty-acid CoA ligase (AMP-forming) [Medicago truncatula]
COGYP_007160865.16.00E-119long-chain-fatty-acid--CoA ligase [Cyanobacterium aponinum PCC 10605]
Swissprottr|Q9LK39|AAE16_ARATH0Probable acyl-activating enzyme 16, chloroplastic (Precursor)
trEMBLtr|G7LH35|G7LH35_MEDTR0Long-chain-fatty-acid CoA ligase (AMP-forming) {ECO:0000313|EMBL:AET04094.2}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold00366169202173958-


Gene family

Gene familysubfamily
----


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K01897ACSL, fadD EC:6.2.1.3 Fatty acid metabolism map01212
Fatty acid biosynthesismap00061
Fatty acid degradationmap00071
Peroxisomemap04146
Quorum sensingmap02024
Adipocytokine signaling pathwaymap04920
PPAR signaling pathwaymap03320


Gene Ontology

biological_process

GO:0008152  metabolic process


molecular_function

GO:0003824  catalytic activity


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000366s00019239.1PF00501.23AMP-binding223242.50E-66


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control16.246
SRR1783600control16.080
SRR1783602moderate drought stress11.919
SRR1811619moderate drought stress12.103

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain2.463
DRR006520Root Summer glycyrrhizin high producing strain2.389
DRR006521Root Winter glycyrrhizin high producing strain1.247
DRR006522Root Winter glycyrrhizin high producing strain1.170
DRR006523Root Summer glycyrrhizin low producing strain15.001
DRR006524Root Summer glycyrrhizin low producing strain14.957
DRR006525Leaf Summer glycyrrhizin high producing strain2.920
DRR006526Leaf Summer glycyrrhizin high producing strain2.604

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)0.041
SRR2868004Drought Stress(Tissue:root)0.103
SRR2967015Control (Tissue:root)0.094

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave9.130
SRR9715740Leave9.765
SRR9715741Leave15.789
SRR9715739Root1.800
SRR9715742Root2.547
SRR9715743Root1.923

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h0.049
SRR8749028MeJA induced 9h0.041
SRR8749029MeJA induced 9h0.361
SRR8749030Uninduced0.109
SRR8749031Uninduced0.176
SRR8749032Uninduced0.046

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root13.855
SRR8400027Control-Root13.133

© 2021 Resource Institute for Chinese & Ethnic Materia Medica ,Guizhou University of Traditional Chinese Medicine
State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved