Gene detail information of Glyur000367s00029064.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G07540.1 | 3.00E-86 | TRF-like 2 |
| NR | KEH22891.1 | 0 | double-strand telomere-binding protein, putative [Medicago truncatula] |
| Swissprot | tr|Q6R0E3|TRP5_ARATH | 6.00E-107 | Telomere repeat-binding protein 5 |
| trEMBL | tr|A0A072U0H7|A0A072U0H7_MEDTR | 0 | Double-strand telomere-binding protein, putative {ECO:0000313|EMBL:KEH22891.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00367 | 3254 | 9509 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | MYB-related |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000367s00029064.1 | PF00249.26 | Myb_DNA-binding | 526 | 575 | 2.00E-05 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 1.834 |
| SRR1783600 | control | 2.027 |
| SRR1783602 | moderate drought stress | 2.733 |
| SRR1811619 | moderate drought stress | 2.499 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 3.936 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 3.512 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 1.261 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.943 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 3.249 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 3.162 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 9.520 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 9.634 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 3.292 |
| SRR2868004 | Drought Stress(Tissue:root) | 3.566 |
| SRR2967015 | Control (Tissue:root) | 2.968 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 9.966 |
| SRR9715740 | Leave | 17.696 |
| SRR9715741 | Leave | 10.467 |
| SRR9715739 | Root | 0.569 |
| SRR9715742 | Root | 3.107 |
| SRR9715743 | Root | 2.190 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.616 |
| SRR8749028 | MeJA induced 9h | 0.577 |
| SRR8749029 | MeJA induced 9h | 0.362 |
| SRR8749030 | Uninduced | 0.078 |
| SRR8749031 | Uninduced | 0.153 |
| SRR8749032 | Uninduced | 0.233 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 7.044 |
| SRR8400027 | Control-Root | 6.349 |