Gene detail information of Glyur000368s00021702.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G67480.2 | 7.00E-133 | Galactose oxidase/kelch repeat superfamily protein |
| NR | XP_003538557.2 | 0 | PREDICTED: F-box/kelch-repeat protein At1g67480-like [Glycine max] |
| COG | YP_003324485.1 | 7.00E-17 | Kelch repeat-containing protein [Thermobaculum terrenum ATCC BAA-798] |
| Swissprot | tr|Q9CAG8|FBK28_ARATH | 4.00E-174 | F-box/kelch-repeat protein At1g67480 |
| trEMBL | tr|K7LS05|K7LS05_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA11G37193.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00368 | 42620 | 44886 | - |
Gene family
| Gene family | subfamily |
|---|---|
| Ubiquitin Family | F-box |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000368s00021702.1 | PF01344.20 | Kelch_1 | 140 | 187 | 3.40E-09 |
| Glyur000368s00021702.1 | PF01344.20 | Kelch_1 | 189 | 234 | 3.40E-12 |
| Glyur000368s00021702.1 | PF01344.20 | Kelch_1 | 243 | 282 | 9.90E-07 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 21.088 |
| SRR1783600 | control | 21.939 |
| SRR1783602 | moderate drought stress | 19.531 |
| SRR1811619 | moderate drought stress | 19.529 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 43.734 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 41.278 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 10.758 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 10.826 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 62.403 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 61.566 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 16.113 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 15.841 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 72.594 |
| SRR2868004 | Drought Stress(Tissue:root) | 107.180 |
| SRR2967015 | Control (Tissue:root) | 63.965 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 156.863 |
| SRR9715740 | Leave | 148.304 |
| SRR9715741 | Leave | 148.130 |
| SRR9715739 | Root | 80.004 |
| SRR9715742 | Root | 151.386 |
| SRR9715743 | Root | 129.678 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 29.467 |
| SRR8749028 | MeJA induced 9h | 65.602 |
| SRR8749029 | MeJA induced 9h | 41.956 |
| SRR8749030 | Uninduced | 53.498 |
| SRR8749031 | Uninduced | 85.477 |
| SRR8749032 | Uninduced | 99.800 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 50.419 |
| SRR8400027 | Control-Root | 38.933 |