Gene detail information of Glyur000368s00021704.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT1G67440.12.00E-118Minichromosome maintenance (MCM2/3/5) family protein
NRXP_004502304.11.46E-173PREDICTED: putative ribosome biogenesis GTPase RsgA-like [Cicer arietinum]
COGYP_001514796.14.00E-70ribosome-associated GTPase [Acaryochloris marina MBIC11017]
trEMBLtr|G7JC10|G7JC10_MEDTR5.00E-171Ribosome biogenesis GTPase RsgA, putative {ECO:0000313|EMBL:AES72053.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold003685287957101+


Gene family

Gene familysubfamily
----


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K06949rsgA, engC EC:3.6.1.- 3.1.3.100 Thiamine metabolism map00730


Gene Ontology

molecular_function

GO:0003924  GTPase activity

GO:0005525  GTP binding



Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000368s00021704.1PF03193.11DUF2581573197.00E-41


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control3.375
SRR1783600control3.662
SRR1783602moderate drought stress3.791
SRR1811619moderate drought stress4.157

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain4.393
DRR006520Root Summer glycyrrhizin high producing strain4.769
DRR006521Root Winter glycyrrhizin high producing strain3.487
DRR006522Root Winter glycyrrhizin high producing strain3.684
DRR006523Root Summer glycyrrhizin low producing strain2.099
DRR006524Root Summer glycyrrhizin low producing strain2.806
DRR006525Leaf Summer glycyrrhizin high producing strain2.090
DRR006526Leaf Summer glycyrrhizin high producing strain2.795

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)1.212
SRR2868004Drought Stress(Tissue:root)1.916
SRR2967015Control (Tissue:root)1.239

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave0.922
SRR9715740Leave2.149
SRR9715741Leave1.121
SRR9715739Root2.943
SRR9715742Root1.653
SRR9715743Root2.116

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h1.016
SRR8749028MeJA induced 9h0.733
SRR8749029MeJA induced 9h0.257
SRR8749030Uninduced0.099
SRR8749031Uninduced0.000
SRR8749032Uninduced0.000

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root2.985
SRR8400027Control-Root2.787

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved