Gene detail information of Glyur000368s00021705.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT4G40042.12.00E-25Microsomal signal peptidase 12 kDa subunit (SPC12)
NRXP_003551412.18.13E-44PREDICTED: probable signal peptidase complex subunit 1-like isoform X1 [Glycine max]
Swissprottr|Q944J0|SPCS1_ARATH2.00E-33Probable signal peptidase complex subunit 1
trEMBLtr|I1MYG5|I1MYG5_SOYBN3.00E-44Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA18G01120.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold003685889759616-


Gene family

Gene familysubfamily
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KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K12946SPCS1 EC:3.4.-.- Protein export map03060


Gene Ontology

biological_process

GO:0006465  signal peptide processing


cellular_component

GO:0005787  signal peptidase complex

GO:0016021  integral component of membrane


molecular_function

GO:0008233  peptidase activity

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Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000368s00021705.1PF06645.8SPC121731.10E-24


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control36.610
SRR1783600control34.216
SRR1783602moderate drought stress23.409
SRR1811619moderate drought stress24.293

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain15.987
DRR006520Root Summer glycyrrhizin high producing strain17.281
DRR006521Root Winter glycyrrhizin high producing strain12.187
DRR006522Root Winter glycyrrhizin high producing strain17.280
DRR006523Root Summer glycyrrhizin low producing strain14.309
DRR006524Root Summer glycyrrhizin low producing strain9.740
DRR006525Leaf Summer glycyrrhizin high producing strain6.631
DRR006526Leaf Summer glycyrrhizin high producing strain5.956

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)2.519
SRR2868004Drought Stress(Tissue:root)2.432
SRR2967015Control (Tissue:root)1.788

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave2.727
SRR9715740Leave1.891
SRR9715741Leave2.693
SRR9715739Root3.381
SRR9715742Root3.046
SRR9715743Root2.197

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h2.490
SRR8749028MeJA induced 9h1.617
SRR8749029MeJA induced 9h3.045
SRR8749030Uninduced2.579
SRR8749031Uninduced1.521
SRR8749032Uninduced1.852

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root5.619
SRR8400027Control-Root4.833

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved