Gene detail information of Glyur000368s00021708.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G67410.1 | 6.00E-146 | Exostosin family protein |
| NR | XP_004502300.1 | 0 | PREDICTED: probable glycosyltransferase At3g07620-like [Cicer arietinum] |
| Swissprot | tr|Q6DBG8|ARAD1_ARATH | 3.00E-84 | Probable arabinosyltransferase ARAD1 |
| trEMBL | tr|G7JC05|G7JC05_MEDTR | 0 | Exostosin-like protein {ECO:0000313|EMBL:AES72048.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00368 | 76462 | 82020 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Carbohydrate-Active enzymes Family | GT47 |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene OntologyNot hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000368s00021708.1 | PF03016.10 | Exostosin | 57 | 372 | 1.50E-77 |
| Glyur000368s00021708.1 | PF03016.10 | Exostosin | 420 | 496 | 7.40E-28 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 1.003 |
| SRR1783600 | control | 1.074 |
| SRR1783602 | moderate drought stress | 1.452 |
| SRR1811619 | moderate drought stress | 1.317 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 1.464 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 1.775 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 1.072 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.889 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.868 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.951 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.750 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.748 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 4.900 |
| SRR2868004 | Drought Stress(Tissue:root) | 5.289 |
| SRR2967015 | Control (Tissue:root) | 5.761 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 0.931 |
| SRR9715740 | Leave | 1.081 |
| SRR9715741 | Leave | 0.824 |
| SRR9715739 | Root | 1.386 |
| SRR9715742 | Root | 1.376 |
| SRR9715743 | Root | 1.465 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 1.173 |
| SRR8749028 | MeJA induced 9h | 2.497 |
| SRR8749029 | MeJA induced 9h | 1.357 |
| SRR8749030 | Uninduced | 1.911 |
| SRR8749031 | Uninduced | 1.400 |
| SRR8749032 | Uninduced | 0.826 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 2.904 |
| SRR8400027 | Control-Root | 3.229 |