Gene detail information of Glyur000368s00021712.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G43250.1 | 5.00E-36 | nuclear factor Y, subunit C13 |
| NR | XP_003537536.2 | 5.85E-64 | PREDICTED: dr1-associated corepressor-like [Glycine max] |
| trEMBL | tr|I1LN86|I1LN86_SOYBN | 2.00E-63 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA11G37130.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00368 | 108179 | 108658 | - |
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | NF-YC |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000368s00021712.1 | PF00808.18 | CBFD_NFYB_HMF | 16 | 79 | 1.70E-17 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 5.795 |
| SRR1783600 | control | 5.484 |
| SRR1783602 | moderate drought stress | 3.818 |
| SRR1811619 | moderate drought stress | 3.979 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 4.277 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 4.573 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 1.359 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.907 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 1.532 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 2.285 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 1.162 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 1.159 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 12.204 |
| SRR2868004 | Drought Stress(Tissue:root) | 6.826 |
| SRR2967015 | Control (Tissue:root) | 4.775 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 3.756 |
| SRR9715740 | Leave | 1.133 |
| SRR9715741 | Leave | 1.969 |
| SRR9715739 | Root | 1.967 |
| SRR9715742 | Root | 2.193 |
| SRR9715743 | Root | 1.206 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 24.230 |
| SRR8749028 | MeJA induced 9h | 9.046 |
| SRR8749029 | MeJA induced 9h | 6.663 |
| SRR8749030 | Uninduced | 2.446 |
| SRR8749031 | Uninduced | 1.014 |
| SRR8749032 | Uninduced | 1.275 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 13.115 |
| SRR8400027 | Control-Root | 11.891 |