Gene detail information of Glyur000368s00021719.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G67340.1 | 6.00E-131 | HCP-like superfamily protein with MYND-type zinc finger |
| NR | XP_003538548.2 | 0 | PREDICTED: F-box protein At1g67340-like [Glycine max] |
| Swissprot | tr|Q9FYF9|FB76_ARATH | 3.00E-168 | F-box protein At1g67340 |
| trEMBL | tr|G7JBZ1|G7JBZ1_MEDTR | 0 | HCP family protein with MYND-type zinc finger protein {ECO:0000313|EMBL:AES72034.2} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00368 | 169867 | 171883 | - |
Gene family
| Gene family | subfamily |
|---|---|
| Ubiquitin Family | F-box |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000368s00021719.1 | PF08238.7 | Sel1 | 129 | 146 | 54 |
| Glyur000368s00021719.1 | PF08238.7 | Sel1 | 161 | 199 | 0.48 |
| Glyur000368s00021719.1 | PF08238.7 | Sel1 | 201 | 230 | 0.52 |
| Glyur000368s00021719.1 | PF01753.13 | zf-MYND | 320 | 360 | 2.70E-08 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 12.544 |
| SRR1783600 | control | 12.535 |
| SRR1783602 | moderate drought stress | 17.618 |
| SRR1811619 | moderate drought stress | 17.618 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 19.623 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 19.321 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 4.252 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 4.331 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 13.745 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 13.696 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 43.456 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 43.501 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 23.969 |
| SRR2868004 | Drought Stress(Tissue:root) | 31.601 |
| SRR2967015 | Control (Tissue:root) | 42.874 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 25.150 |
| SRR9715740 | Leave | 42.835 |
| SRR9715741 | Leave | 27.148 |
| SRR9715739 | Root | 42.044 |
| SRR9715742 | Root | 18.125 |
| SRR9715743 | Root | 21.129 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 10.591 |
| SRR8749028 | MeJA induced 9h | 2.819 |
| SRR8749029 | MeJA induced 9h | 2.185 |
| SRR8749030 | Uninduced | 1.339 |
| SRR8749031 | Uninduced | 0.147 |
| SRR8749032 | Uninduced | 0.062 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 17.252 |
| SRR8400027 | Control-Root | 16.898 |