Gene detail information of Glyur000369s00020543.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT1G01120.103-ketoacyl-CoA synthase 1
NRXP_003626601.103-ketoacyl-CoA synthase [Medicago truncatula]
COGNP_285649.13.00E-18chalcone synthase [Deinococcus radiodurans R1]
Swissprottr|Q9MAM3|KCS1_ARATH03-ketoacyl-CoA synthase 1
trEMBLtr|Q2HTC9|Q2HTC9_MEDTR03-ketoacyl-CoA synthase {ECO:0000256|PIRNR:PIRNR036417}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold003694697648592-


Gene family

Gene familysubfamily
----


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K15397KCS EC:2.3.1.199 Fatty acid elongation map00062


Gene Ontology

biological_process

GO:0006633  fatty acid biosynthetic process

GO:0008152  metabolic process

GO:0008610  lipid biosynthetic process


cellular_component

GO:0016020  membrane


molecular_function

GO:0003824  catalytic activity

GO:0016747  transferase activity, transferring acyl groups other than amino-acyl groups

"

Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000369s00020543.1PF08392.7FAE1_CUT1_RppA1174051.50E-139
Glyur000369s00020543.1PF08541.5ACP_syn_III_C4235033.10E-11


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control28.725
SRR1783600control28.412
SRR1783602moderate drought stress23.098
SRR1811619moderate drought stress22.806

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain2.450
DRR006520Root Summer glycyrrhizin high producing strain2.506
DRR006521Root Winter glycyrrhizin high producing strain0.000
DRR006522Root Winter glycyrrhizin high producing strain0.000
DRR006523Root Summer glycyrrhizin low producing strain3.078
DRR006524Root Summer glycyrrhizin low producing strain3.155
DRR006525Leaf Summer glycyrrhizin high producing strain25.808
DRR006526Leaf Summer glycyrrhizin high producing strain25.234

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)86.177
SRR2868004Drought Stress(Tissue:root)44.099
SRR2967015Control (Tissue:root)41.269

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave26.169
SRR9715740Leave13.178
SRR9715741Leave10.313
SRR9715739Root52.649
SRR9715742Root22.928
SRR9715743Root30.780

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h0.454
SRR8749028MeJA induced 9h0.207
SRR8749029MeJA induced 9h0.113
SRR8749030Uninduced1.121
SRR8749031Uninduced1.298
SRR8749032Uninduced1.508

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root106.943
SRR8400027Control-Root110.902

© 2021 Resource Institute for Chinese & Ethnic Materia Medica ,Guizhou University of Traditional Chinese Medicine
State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved