Gene detail information of Glyur000370s00022658.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G46620.1 | 9.00E-50 | zinc finger (C3HC4-type RING finger) family protein |
| NR | XP_007163425.1 | 5.25E-149 | hypothetical protein PHAVU_001G233700g [Phaseolus vulgaris] |
| Swissprot | tr|P0CH30|RING1_GOSHI | 1.00E-33 | E3 ubiquitin-protein ligase RING1 |
| trEMBL | tr|V7CZ69|V7CZ69_PHAVU | 2.00E-149 | Uncharacterized protein {ECO:0000313|EMBL:ESW35419.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00370 | 16474 | 17718 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Ubiquitin Family | RING |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000370s00022658.1 | PF14369.1 | zf-RING_3 | 4 | 35 | 2.10E-13 |
| Glyur000370s00022658.1 | PF13639.1 | zf-RING_2 | 192 | 234 | 5.60E-11 |
| Glyur000370s00022658.1 | PF06547.7 | DUF1117 | 260 | 372 | 9.90E-31 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.059 |
| SRR1783600 | control | 0.059 |
| SRR1783602 | moderate drought stress | 0.000 |
| SRR1811619 | moderate drought stress | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.000 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.000 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.000 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.000 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.000 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 0.007 |
| SRR2868004 | Drought Stress(Tissue:root) | 0.040 |
| SRR2967015 | Control (Tissue:root) | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 0.000 |
| SRR9715740 | Leave | 0.000 |
| SRR9715741 | Leave | 0.000 |
| SRR9715739 | Root | 0.104 |
| SRR9715742 | Root | 0.000 |
| SRR9715743 | Root | 0.099 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.000 |
| SRR8749028 | MeJA induced 9h | 0.000 |
| SRR8749029 | MeJA induced 9h | 0.000 |
| SRR8749030 | Uninduced | 0.000 |
| SRR8749031 | Uninduced | 0.000 |
| SRR8749032 | Uninduced | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 0.173 |
| SRR8400027 | Control-Root | 0.358 |