Gene detail information of Glyur000370s00022661.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G55530.1 | 1.00E-90 | RING/U-box superfamily protein |
| NR | NP_001241380.1 | 9.56E-160 | uncharacterized protein LOC100777936 [Glycine max] |
| Swissprot | tr|Q9M2S6|SDIR1_ARATH | 1.00E-142 | E3 ubiquitin-protein ligase SDIR1 |
| trEMBL | tr|C6TKE4|C6TKE4_SOYBN | 4.00E-160 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA18G04160.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00370 | 28552 | 32871 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Ubiquitin Family | RING |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000370s00022661.1 | PF13639.1 | zf-RING_2 | 302 | 344 | 5.80E-13 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 31.649 |
| SRR1783600 | control | 31.781 |
| SRR1783602 | moderate drought stress | 37.284 |
| SRR1811619 | moderate drought stress | 37.170 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 37.484 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 36.849 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 70.597 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 69.476 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 34.041 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 34.689 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 23.528 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 23.239 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 52.712 |
| SRR2868004 | Drought Stress(Tissue:root) | 60.624 |
| SRR2967015 | Control (Tissue:root) | 62.323 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 27.513 |
| SRR9715740 | Leave | 28.086 |
| SRR9715741 | Leave | 35.768 |
| SRR9715739 | Root | 34.759 |
| SRR9715742 | Root | 30.934 |
| SRR9715743 | Root | 30.397 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 59.924 |
| SRR8749028 | MeJA induced 9h | 52.152 |
| SRR8749029 | MeJA induced 9h | 58.453 |
| SRR8749030 | Uninduced | 61.809 |
| SRR8749031 | Uninduced | 59.856 |
| SRR8749032 | Uninduced | 75.342 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 46.206 |
| SRR8400027 | Control-Root | 41.820 |