Gene detail information of Glyur000370s00022670.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G48670.2 | 0 | XH/XS domain-containing protein |
| NR | XP_004490889.1 | 0 | PREDICTED: uncharacterized protein LOC101499007 isoform X1 [Cicer arietinum] |
| Swissprot | tr|Q8VZ79|IDN2_ARATH | 0 | Protein INVOLVED IN DE NOVO 2 {ECO:0000303|PubMed:19915591} |
| trEMBL | tr|K7M5B9|K7M5B9_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA14G07370.3} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00370 | 127468 | 137586 | - |
Gene family
| Gene family | subfamily |
|---|---|
| Ubiquitin Family | RING |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000370s00022670.1 | PF03470.9 | zf-XS | 60 | 102 | 6.10E-17 |
| Glyur000370s00022670.1 | PF03470.9 | zf-XS | 174 | 215 | 1.20E-11 |
| Glyur000370s00022670.1 | PF03470.9 | zf-XS | 290 | 333 | 6.70E-17 |
| Glyur000370s00022670.1 | PF03470.9 | zf-XS | 407 | 451 | 6.40E-17 |
| Glyur000370s00022670.1 | PF03470.9 | zf-XS | 525 | 568 | 1.80E-18 |
| Glyur000370s00022670.1 | PF03468.9 | XS | 594 | 710 | 8.00E-38 |
| Glyur000370s00022670.1 | PF03469.9 | XH | 983 | 1115 | 3.30E-50 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 11.975 |
| SRR1783600 | control | 12.015 |
| SRR1783602 | moderate drought stress | 13.347 |
| SRR1811619 | moderate drought stress | 13.117 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 13.020 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 13.016 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 7.470 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 7.379 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 10.758 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 10.756 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 4.773 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 4.806 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 14.122 |
| SRR2868004 | Drought Stress(Tissue:root) | 15.763 |
| SRR2967015 | Control (Tissue:root) | 15.290 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 7.741 |
| SRR9715740 | Leave | 8.256 |
| SRR9715741 | Leave | 7.127 |
| SRR9715739 | Root | 0.630 |
| SRR9715742 | Root | 3.848 |
| SRR9715743 | Root | 2.964 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 6.329 |
| SRR8749028 | MeJA induced 9h | 7.965 |
| SRR8749029 | MeJA induced 9h | 5.625 |
| SRR8749030 | Uninduced | 10.351 |
| SRR8749031 | Uninduced | 10.254 |
| SRR8749032 | Uninduced | 4.923 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 23.299 |
| SRR8400027 | Control-Root | 23.020 |