Gene detail information of Glyur000372s00017104.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT5G08415.14.00E-155Radical SAM superfamily protein
NRXP_004514720.10PREDICTED: lipoyl synthase 2, chloroplastic-like [Cicer arietinum]
COGYP_003176511.16.00E-108lipoyl synthase [Halomicrobium mukohataei DSM 12286]
Swissprottr|B9RX57|LISC_RICCO0Lipoyl synthase, chloroplastic {ECO:0000255|HAMAP-Rule:MF_03129} (Precursor)
trEMBLtr|A0A072VTI6|A0A072VTI6_MEDTR0Lipoyl synthase, chloroplastic {ECO:0000256|HAMAP-Rule:MF_03129}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold003725180255945+


Gene family

Gene familysubfamily
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KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K03644lipA EC:2.8.1.8 Lipoic acid metabolism map00785


Gene Ontology

biological_process

GO:0009107  lipoate biosynthetic process


cellular_component

GO:0009507  chloroplast


molecular_function

GO:0003824  catalytic activity

GO:0016992  lipoate synthase activity

GO:0051536  iron-sulfur cluster binding

GO:0051539  4 iron, 4 sulfur cluster binding

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Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000372s00017104.1PF04055.16Radical_SAM1452962.10E-10


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control21.197
SRR1783600control21.546
SRR1783602moderate drought stress12.667
SRR1811619moderate drought stress12.453

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain15.236
DRR006520Root Summer glycyrrhizin high producing strain15.127
DRR006521Root Winter glycyrrhizin high producing strain6.221
DRR006522Root Winter glycyrrhizin high producing strain5.891
DRR006523Root Summer glycyrrhizin low producing strain12.617
DRR006524Root Summer glycyrrhizin low producing strain12.521
DRR006525Leaf Summer glycyrrhizin high producing strain20.098
DRR006526Leaf Summer glycyrrhizin high producing strain20.389

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)18.564
SRR2868004Drought Stress(Tissue:root)15.628
SRR2967015Control (Tissue:root)12.959

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave13.802
SRR9715740Leave15.913
SRR9715741Leave12.215
SRR9715739Root14.704
SRR9715742Root11.336
SRR9715743Root10.741

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h6.369
SRR8749028MeJA induced 9h4.634
SRR8749029MeJA induced 9h4.147
SRR8749030Uninduced2.604
SRR8749031Uninduced0.784
SRR8749032Uninduced0.882

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root35.854
SRR8400027Control-Root35.852

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved