Gene detail information of Glyur000372s00017119.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT2G46290.12.00E-126Transducin/WD40 repeat-like superfamily protein
NRXP_003517705.10PREDICTED: eukaryotic translation initiation factor 3 subunit I-like [Glycine max]
COGYP_003167824.17.00E-23WD-40 repeat-containing protein [Candidatus Accumulibacter phosphatis clade IIA str. UW-1]
Swissprottr|Q38884|EIF3I_ARATH1.00E-151Eukaryotic translation initiation factor 3 subunit I {ECO:0000255|HAMAP-Rule:MF_03008}
trEMBLtr|I1J582|I1J582_SOYBN0Eukaryotic translation initiation factor 3 subunit I {ECO:0000256|HAMAP-Rule:MF_03008}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold00372119286124324+


Gene family

Gene familysubfamily
Ubiquitin FamilyDWD


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
----------


Gene Ontology

cellular_component

GO:0005737  cytoplasm

GO:0005852  eukaryotic translation initiation factor 3 complex


molecular_function

GO:0003743  translation initiation factor activity

GO:0005515  protein binding


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000372s00017119.1PF00400.27WD407370.13
Glyur000372s00017119.1PF00400.27WD4054710.052
Glyur000372s00017119.1PF00400.27WD401631944.00E-06
Glyur000372s00017119.1PF00400.27WD402602893.30E-06


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control100.138
SRR1783600control101.574
SRR1783602moderate drought stress118.034
SRR1811619moderate drought stress118.831

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain131.833
DRR006520Root Summer glycyrrhizin high producing strain131.927
DRR006521Root Winter glycyrrhizin high producing strain138.782
DRR006522Root Winter glycyrrhizin high producing strain136.659
DRR006523Root Summer glycyrrhizin low producing strain131.929
DRR006524Root Summer glycyrrhizin low producing strain135.005
DRR006525Leaf Summer glycyrrhizin high producing strain31.931
DRR006526Leaf Summer glycyrrhizin high producing strain31.619

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)143.972
SRR2868004Drought Stress(Tissue:root)110.993
SRR2967015Control (Tissue:root)116.483

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave62.450
SRR9715740Leave77.614
SRR9715741Leave76.345
SRR9715739Root154.738
SRR9715742Root143.387
SRR9715743Root156.814

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h183.581
SRR8749028MeJA induced 9h97.834
SRR8749029MeJA induced 9h121.006
SRR8749030Uninduced41.007
SRR8749031Uninduced14.162
SRR8749032Uninduced41.079

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root134.008
SRR8400027Control-Root119.871

© 2021 Resource Institute for Chinese & Ethnic Materia Medica ,Guizhou University of Traditional Chinese Medicine
State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved