Gene detail information of Glyur000372s00017124.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT2G21390.10Coatomer, alpha subunit
NRXP_003536291.10PREDICTED: coatomer subunit alpha-1-like [Glycine max]
COGYP_003890644.18.00E-37WD40 repeat-containing protein [Cyanothece sp. PCC 7822]
Swissprottr|Q9SJT9|COPA2_ARATH0Coatomer subunit alpha-2
trEMBLtr|I1LCN7|I1LCN7_SOYBN0Coatomer subunit alpha {ECO:0000256|PIRNR:PIRNR003354}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold00372157297162277-


Gene family

Gene familysubfamily
Ubiquitin FamilyDWD


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
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Gene Ontology

biological_process

GO:0006886  intracellular protein transport

GO:0016192  vesicle-mediated transport


cellular_component

GO:0030117  membrane coat

GO:0030126  COPI vesicle coat


molecular_function

GO:0005198  structural molecule activity

GO:0005515  protein binding

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Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000372s00017124.1PF00400.27WD4044792.00E-07
Glyur000372s00017124.1PF00400.27WD40841213.30E-09
Glyur000372s00017124.1PF00400.27WD401261635.20E-10
Glyur000372s00017124.1PF00400.27WD401962318.60E-08
Glyur000372s00017124.1PF00400.27WD402422767.20E-07
Glyur000372s00017124.1PF04053.9Coatomer_WDAD3407671.80E-135
Glyur000372s00017124.1PF06957.6COPI_C83212175.40E-170


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control44.867
SRR1783600control45.293
SRR1783602moderate drought stress52.054
SRR1811619moderate drought stress52.041

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain36.422
DRR006520Root Summer glycyrrhizin high producing strain35.500
DRR006521Root Winter glycyrrhizin high producing strain24.396
DRR006522Root Winter glycyrrhizin high producing strain23.968
DRR006523Root Summer glycyrrhizin low producing strain34.751
DRR006524Root Summer glycyrrhizin low producing strain34.703
DRR006525Leaf Summer glycyrrhizin high producing strain13.076
DRR006526Leaf Summer glycyrrhizin high producing strain12.969

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)48.605
SRR2868004Drought Stress(Tissue:root)40.140
SRR2967015Control (Tissue:root)43.132

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave12.073
SRR9715740Leave11.828
SRR9715741Leave13.713
SRR9715739Root10.070
SRR9715742Root32.641
SRR9715743Root29.277

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h31.443
SRR8749028MeJA induced 9h30.691
SRR8749029MeJA induced 9h14.279
SRR8749030Uninduced7.833
SRR8749031Uninduced4.224
SRR8749032Uninduced5.817

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root45.439
SRR8400027Control-Root45.966

© 2021 Resource Institute for Chinese & Ethnic Materia Medica ,Guizhou University of Traditional Chinese Medicine
State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved