Gene detail information of Glyur000372s00017126.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT3G10390.10Flavin containing amine oxidoreductase family protein
NRXP_004504519.10PREDICTED: lysine-specific histone demethylase 1 homolog 3-like isoform X1 [Cicer arietinum]
COGYP_001544095.12.00E-64amine oxidase [Herpetosiphon aurantiacus DSM 785]
Swissprottr|Q9CAE3|FLD_ARATH0Protein FLOWERING LOCUS D
trEMBLtr|V7BKH0|V7BKH0_PHAVU0Uncharacterized protein {ECO:0000313|EMBL:ESW17528.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold00372170888174681+


Gene family

Gene familysubfamily
Transcription Factors FamilySWI/SNF-SWI3


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
----------


Gene Ontology

biological_process

GO:0055114  oxidation-reduction process


molecular_function

GO:0003677  DNA binding

GO:0005515  protein binding

GO:0016491  oxidoreductase activity


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000372s00017126.1PF04433.12SWIRM1332176.80E-15
Glyur000372s00017126.1PF01593.19Amino_oxidase2436691.50E-100


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control6.382
SRR1783600control6.405
SRR1783602moderate drought stress8.594
SRR1811619moderate drought stress8.555

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain7.232
DRR006520Root Summer glycyrrhizin high producing strain7.345
DRR006521Root Winter glycyrrhizin high producing strain5.461
DRR006522Root Winter glycyrrhizin high producing strain5.206
DRR006523Root Summer glycyrrhizin low producing strain6.610
DRR006524Root Summer glycyrrhizin low producing strain6.660
DRR006525Leaf Summer glycyrrhizin high producing strain4.622
DRR006526Leaf Summer glycyrrhizin high producing strain4.558

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)8.802
SRR2868004Drought Stress(Tissue:root)9.721
SRR2967015Control (Tissue:root)9.648

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave4.227
SRR9715740Leave5.902
SRR9715741Leave6.945
SRR9715739Root2.175
SRR9715742Root8.343
SRR9715743Root7.030

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h4.648
SRR8749028MeJA induced 9h7.690
SRR8749029MeJA induced 9h3.734
SRR8749030Uninduced3.905
SRR8749031Uninduced2.987
SRR8749032Uninduced2.421

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root9.525
SRR8400027Control-Root8.923

© 2021 Resource Institute for Chinese & Ethnic Materia Medica ,Guizhou University of Traditional Chinese Medicine
State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved