Gene detail information of Glyur000373s00018526.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G49610.1 | 1.00E-06 | F-box family protein |
| NR | XP_010277836.1 | 4.00E-17 | PREDICTED: F-box protein At3g07870-like [Nelumbo nucifera] |
| trEMBL | tr|K4CRM7|K4CRM7_SOLLC | 2.00E-15 | Uncharacterized protein {ECO:0000313|EnsemblPlants:Solyc09g012020.1.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00373 | 2630 | 3766 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Ubiquitin Family | F-box |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000373s00018526.1 | PF00646.28 | F-box | 30 | 67 | 1.40E-05 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 1.112 |
| SRR1783600 | control | 1.141 |
| SRR1783602 | moderate drought stress | 0.723 |
| SRR1811619 | moderate drought stress | 0.720 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 2.163 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 1.743 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.291 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.240 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.164 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.163 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 3.415 |
| SRR2868004 | Drought Stress(Tissue:root) | 2.637 |
| SRR2967015 | Control (Tissue:root) | 2.426 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 5.266 |
| SRR9715740 | Leave | 0.508 |
| SRR9715741 | Leave | 2.902 |
| SRR9715739 | Root | 0.088 |
| SRR9715742 | Root | 4.915 |
| SRR9715743 | Root | 2.601 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.000 |
| SRR8749028 | MeJA induced 9h | 0.000 |
| SRR8749029 | MeJA induced 9h | 0.000 |
| SRR8749030 | Uninduced | 0.000 |
| SRR8749031 | Uninduced | 0.000 |
| SRR8749032 | Uninduced | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 0.715 |
| SRR8400027 | Control-Root | 0.887 |