Gene detail information of Glyur000373s00018531.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G44740.2 | 0 | Y-family DNA polymerase H |
| NR | XP_004504643.1 | 0 | PREDICTED: DNA polymerase eta-like isoform X3 [Cicer arietinum] |
| COG | YP_003194519.1 | 3.00E-37 | DNA polymerase IV [Robiginitalea biformata HTCC2501] |
| Swissprot | tr|Q8H2D5|POLH_ARATH | 0 | DNA polymerase eta |
| trEMBL | tr|I1KRK8|I1KRK8_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA08G09400.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00373 | 36255 | 48782 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| K03509 | POLH | EC:2.7.7.7 | Fanconi anemia pathway | map03460 |
| Platinum drug resistance | map01524 |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000373s00018531.1 | PF00817.15 | IMS | 17 | 223 | 1.70E-46 |
| Glyur000373s00018531.1 | PF11799.3 | IMS_C | 303 | 441 | 6.10E-16 |
| Glyur000373s00018531.1 | PF09139.6 | Mmp37 | 724 | 1039 | 8.00E-96 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 3.369 |
| SRR1783600 | control | 3.330 |
| SRR1783602 | moderate drought stress | 4.375 |
| SRR1811619 | moderate drought stress | 4.364 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 5.230 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 5.132 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 3.789 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 3.833 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 3.931 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 3.918 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 5.458 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 5.269 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 6.236 |
| SRR2868004 | Drought Stress(Tissue:root) | 7.892 |
| SRR2967015 | Control (Tissue:root) | 8.535 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 5.634 |
| SRR9715740 | Leave | 5.965 |
| SRR9715741 | Leave | 5.515 |
| SRR9715739 | Root | 1.120 |
| SRR9715742 | Root | 2.642 |
| SRR9715743 | Root | 2.808 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 6.816 |
| SRR8749028 | MeJA induced 9h | 4.351 |
| SRR8749029 | MeJA induced 9h | 3.741 |
| SRR8749030 | Uninduced | 3.975 |
| SRR8749031 | Uninduced | 4.130 |
| SRR8749032 | Uninduced | 2.745 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 8.573 |
| SRR8400027 | Control-Root | 7.767 |