Gene detail information of Glyur000373s00018533.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G30950.1 | 3.00E-136 | F-box family protein |
| NR | XP_007158866.1 | 0 | hypothetical protein PHAVU_002G188300g [Phaseolus vulgaris] |
| Swissprot | tr|Q39090|UFO_ARATH | 0 | Protein UNUSUAL FLORAL ORGANS |
| trEMBL | tr|V7CNP1|V7CNP1_PHAVU | 0 | Uncharacterized protein {ECO:0000313|EMBL:ESW30860.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00373 | 59359 | 60753 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Ubiquitin Family | F-box |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000373s00018533.1 | PF00646.28 | F-box | 55 | 93 | 4.70E-06 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.131 |
| SRR1783600 | control | 0.131 |
| SRR1783602 | moderate drought stress | 0.334 |
| SRR1811619 | moderate drought stress | 0.354 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.544 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.461 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 4.477 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 4.496 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.079 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.079 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.000 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 0.000 |
| SRR2868004 | Drought Stress(Tissue:root) | 0.000 |
| SRR2967015 | Control (Tissue:root) | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 0.000 |
| SRR9715740 | Leave | 0.000 |
| SRR9715741 | Leave | 0.047 |
| SRR9715739 | Root | 0.000 |
| SRR9715742 | Root | 0.204 |
| SRR9715743 | Root | 0.251 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 2.102 |
| SRR8749028 | MeJA induced 9h | 0.450 |
| SRR8749029 | MeJA induced 9h | 3.585 |
| SRR8749030 | Uninduced | 0.392 |
| SRR8749031 | Uninduced | 3.403 |
| SRR8749032 | Uninduced | 2.696 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 0.036 |
| SRR8400027 | Control-Root | 0.025 |