Gene detail information of Glyur000373s00018535.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT4G01220.1 | 3.00E-142 | Nucleotide-diphospho-sugar transferase family protein |
| NR | XP_004504649.1 | 0 | PREDICTED: uncharacterized protein LOC101506544 [Cicer arietinum] |
| Swissprot | tr|Q9M146|MGP4_ARATH | 0 | UDP-D-xylose:L-fucose alpha-1,3-D-xylosyltransferase MGP4 |
| trEMBL | tr|V7CL03|V7CL03_PHAVU | 0 | Uncharacterized protein {ECO:0000313|EMBL:ESW30862.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00373 | 71285 | 75169 | - |
Gene family
| Gene family | subfamily |
|---|---|
| Carbohydrate-Active enzymes Family | GT77 |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene OntologyNot hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000373s00018535.1 | PF03407.11 | Nucleotid_trans | 121 | 335 | 9.60E-47 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 16.196 |
| SRR1783600 | control | 16.012 |
| SRR1783602 | moderate drought stress | 14.278 |
| SRR1811619 | moderate drought stress | 14.067 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 11.152 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 10.597 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 20.169 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 19.476 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 15.854 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 15.530 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 9.588 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 9.884 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 14.247 |
| SRR2868004 | Drought Stress(Tissue:root) | 10.341 |
| SRR2967015 | Control (Tissue:root) | 14.229 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 7.377 |
| SRR9715740 | Leave | 8.450 |
| SRR9715741 | Leave | 7.833 |
| SRR9715739 | Root | 2.368 |
| SRR9715742 | Root | 7.251 |
| SRR9715743 | Root | 6.234 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 11.987 |
| SRR8749028 | MeJA induced 9h | 9.378 |
| SRR8749029 | MeJA induced 9h | 7.380 |
| SRR8749030 | Uninduced | 4.325 |
| SRR8749031 | Uninduced | 5.903 |
| SRR8749032 | Uninduced | 2.891 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 11.258 |
| SRR8400027 | Control-Root | 11.381 |