Gene detail information of Glyur000373s00018539.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G48100.1 | 5.00E-177 | Pectin lyase-like superfamily protein |
| NR | XP_007158878.1 | 0 | hypothetical protein PHAVU_002G189400g [Phaseolus vulgaris] |
| COG | YP_001179193.1 | 8.00E-30 | galacturan 1,4-alpha-galacturonidase [Caldicellulosiruptor saccharolyticus DSM 8903] |
| Swissprot | tr|Q949Z1|PGLR4_ARATH | 0 | Polygalacturonase At1g48100 (Precursor) |
| trEMBL | tr|V7CL10|V7CL10_PHAVU | 0 | Uncharacterized protein {ECO:0000313|EMBL:ESW30872.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00373 | 92922 | 95743 | - |
Gene family
| Gene family | subfamily |
|---|---|
| Carbohydrate-Active enzymes Family | GH28 |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000373s00018539.1 | PF00295.12 | Glyco_hydro_28 | 115 | 428 | 4.50E-89 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 48.576 |
| SRR1783600 | control | 48.652 |
| SRR1783602 | moderate drought stress | 14.195 |
| SRR1811619 | moderate drought stress | 14.198 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 24.754 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 24.017 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.368 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.358 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 14.944 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 15.127 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 5.058 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 4.797 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 28.601 |
| SRR2868004 | Drought Stress(Tissue:root) | 31.081 |
| SRR2967015 | Control (Tissue:root) | 11.100 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 6.659 |
| SRR9715740 | Leave | 0.319 |
| SRR9715741 | Leave | 1.419 |
| SRR9715739 | Root | 36.585 |
| SRR9715742 | Root | 33.276 |
| SRR9715743 | Root | 39.111 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.196 |
| SRR8749028 | MeJA induced 9h | 0.000 |
| SRR8749029 | MeJA induced 9h | 0.000 |
| SRR8749030 | Uninduced | 0.000 |
| SRR8749031 | Uninduced | 0.000 |
| SRR8749032 | Uninduced | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 144.152 |
| SRR8400027 | Control-Root | 155.885 |