Gene detail information of Glyur000373s00018541.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT1G55860.20ubiquitin-protein ligase 1
NRXP_006580062.10PREDICTED: E3 ubiquitin-protein ligase UPL1-like isoform X1 [Glycine max]
Swissprottr|Q8GY23|UPL1_ARATH0E3 ubiquitin-protein ligase UPL1
trEMBLtr|I1K373|I1K373_SOYBN0Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA05G26360.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold00373111911128536-


Gene family

Gene familysubfamily
Ubiquitin FamilyHECT


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K10592HUWE1, MULE, ARF-BP1 EC:2.3.2.26 Ubiquitin mediated proteolysis map04120


Gene Ontology

molecular_function

GO:0004842  ubiquitin-protein transferase activity

GO:0005488  binding

GO:0005515  protein binding



Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000373s00018541.1PF06012.7DUF9081264054.20E-60
Glyur000373s00018541.1PF06025.7DUF9134648326.60E-103
Glyur000373s00018541.1PF00627.26UBA133913753.70E-08
Glyur000373s00018541.1PF14377.1DUF4414267827382.00E-08
Glyur000373s00018541.1PF14377.1DUF4414271428111.70E-29
Glyur000373s00018541.1PF00632.20HECT349538061.60E-94


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control31.931
SRR1783600control31.967
SRR1783602moderate drought stress33.003
SRR1811619moderate drought stress32.781

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain21.238
DRR006520Root Summer glycyrrhizin high producing strain20.955
DRR006521Root Winter glycyrrhizin high producing strain27.999
DRR006522Root Winter glycyrrhizin high producing strain27.122
DRR006523Root Summer glycyrrhizin low producing strain21.615
DRR006524Root Summer glycyrrhizin low producing strain21.707
DRR006525Leaf Summer glycyrrhizin high producing strain12.130
DRR006526Leaf Summer glycyrrhizin high producing strain12.035

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)50.808
SRR2868004Drought Stress(Tissue:root)53.431
SRR2967015Control (Tissue:root)50.874

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave17.576
SRR9715740Leave21.663
SRR9715741Leave20.819
SRR9715739Root6.543
SRR9715742Root57.632
SRR9715743Root47.536

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h30.410
SRR8749028MeJA induced 9h26.733
SRR8749029MeJA induced 9h22.598
SRR8749030Uninduced18.168
SRR8749031Uninduced25.013
SRR8749032Uninduced21.666

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root39.083
SRR8400027Control-Root41.389

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved