Gene detail information of Glyur000373s00018542.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT2G44050.15.00E-636,7-dimethyl-8-ribityllumazine synthase / DMRL synthase / lumazine synthase / riboflavin synthase
NRXP_004504661.11.07E-90PREDICTED: 6,7-dimethyl-8-ribityllumazine synthase, chloroplastic-like isoform X1 [Cicer arietinum]
COGYP_003324477.12.00E-506,7-dimethyl-8-ribityllumazine synthase [Thermobaculum terrenum ATCC BAA-798]
Swissprottr|O80575|RISB_ARATH2.00E-786,7-dimethyl-8-ribityllumazine synthase, chloroplastic (Precursor)
trEMBLtr|A0A072UP30|A0A072UP30_MEDTR2.00E-896,7-dimethyl-8-ribityllumazine synthase {ECO:0000256|RuleBase:RU003795}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold00373137649143821+


Gene family

Gene familysubfamily
----


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K00794ribH, RIB4 EC:2.5.1.78 Riboflavin metabolism map00740


Gene Ontology

biological_process

GO:0009231  riboflavin biosynthetic process


cellular_component

GO:0009349  riboflavin synthase complex


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000373s00018542.1PF00885.14DMRL_synthase551863.50E-48


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control44.181
SRR1783600control44.523
SRR1783602moderate drought stress35.798
SRR1811619moderate drought stress35.857

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain27.707
DRR006520Root Summer glycyrrhizin high producing strain27.438
DRR006521Root Winter glycyrrhizin high producing strain13.856
DRR006522Root Winter glycyrrhizin high producing strain13.183
DRR006523Root Summer glycyrrhizin low producing strain22.865
DRR006524Root Summer glycyrrhizin low producing strain23.305
DRR006525Leaf Summer glycyrrhizin high producing strain24.951
DRR006526Leaf Summer glycyrrhizin high producing strain25.207

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)143.454
SRR2868004Drought Stress(Tissue:root)93.507
SRR2967015Control (Tissue:root)56.019

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave36.663
SRR9715740Leave30.329
SRR9715741Leave25.055
SRR9715739Root76.661
SRR9715742Root41.192
SRR9715743Root47.605

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h77.479
SRR8749028MeJA induced 9h29.161
SRR8749029MeJA induced 9h73.555
SRR8749030Uninduced16.118
SRR8749031Uninduced17.470
SRR8749032Uninduced27.466

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root51.420
SRR8400027Control-Root52.324

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved