Gene detail information of Glyur000374s00017941.3 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G21810.1 | 6.00E-35 | Zinc finger C-x8-C-x5-C-x3-H type family protein |
| NR | XP_004514049.1 | 0 | PREDICTED: zinc finger CCCH domain-containing protein 13-like isoform X2 [Cicer arietinum] |
| Swissprot | tr|Q6H7U2|C3H13_ORYSJ | 1.00E-52 | Zinc finger CCCH domain-containing protein 13 |
| trEMBL | tr|I1KFE7|I1KFE7_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA06G46320.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00374 | 13344 | 22352 | - |
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | C3H |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 7.246 |
| SRR1783600 | control | 7.398 |
| SRR1783602 | moderate drought stress | 11.718 |
| SRR1811619 | moderate drought stress | 11.716 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 6.261 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 6.079 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 11.474 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 11.032 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 5.057 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 5.185 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 5.007 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 5.092 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 7.523 |
| SRR2868004 | Drought Stress(Tissue:root) | 9.403 |
| SRR2967015 | Control (Tissue:root) | 9.616 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 5.771 |
| SRR9715740 | Leave | 7.750 |
| SRR9715741 | Leave | 7.236 |
| SRR9715739 | Root | 0.674 |
| SRR9715742 | Root | 2.884 |
| SRR9715743 | Root | 2.187 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 12.864 |
| SRR8749028 | MeJA induced 9h | 9.387 |
| SRR8749029 | MeJA induced 9h | 6.602 |
| SRR8749030 | Uninduced | 5.410 |
| SRR8749031 | Uninduced | 2.811 |
| SRR8749032 | Uninduced | 3.247 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 11.198 |
| SRR8400027 | Control-Root | 9.938 |