Gene detail information of Glyur000374s00017946.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G05280.1 | 3.00E-112 | Protein of unknown function (DUF604) |
| NR | KEH29637.1 | 0 | transferring glycosyl group transferase [Medicago truncatula] |
| trEMBL | tr|A0A072UIX2|A0A072UIX2_MEDTR | 0 | Transferring glycosyl group transferase {ECO:0000313|EMBL:KEH29637.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00374 | 40676 | 42586 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Carbohydrate-Active enzymes Family | GT31 |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000374s00017946.1 | PF02434.11 | Fringe | 144 | 220 | 1.50E-08 |
| Glyur000374s00017946.1 | PF04646.7 | DUF604 | 240 | 423 | 2.30E-58 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 9.267 |
| SRR1783600 | control | 9.675 |
| SRR1783602 | moderate drought stress | 7.722 |
| SRR1811619 | moderate drought stress | 7.523 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 3.859 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 3.937 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 3.763 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 3.528 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 3.391 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 3.145 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.241 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.244 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 10.641 |
| SRR2868004 | Drought Stress(Tissue:root) | 5.470 |
| SRR2967015 | Control (Tissue:root) | 4.163 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 1.700 |
| SRR9715740 | Leave | 2.416 |
| SRR9715741 | Leave | 3.494 |
| SRR9715739 | Root | 17.023 |
| SRR9715742 | Root | 7.993 |
| SRR9715743 | Root | 7.628 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 8.394 |
| SRR8749028 | MeJA induced 9h | 12.143 |
| SRR8749029 | MeJA induced 9h | 4.412 |
| SRR8749030 | Uninduced | 13.661 |
| SRR8749031 | Uninduced | 1.427 |
| SRR8749032 | Uninduced | 1.430 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 45.311 |
| SRR8400027 | Control-Root | 39.965 |