Gene detail information of Glyur000374s00017948.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT4G03210.13.00E-119xyloglucan endotransglucosylase/hydrolase 9
NRXP_004514041.10PREDICTED: xyloglucan endotransglucosylase/hydrolase protein 9-like [Cicer arietinum]
COGYP_005432194.12.00E-14putative beta-glucanase [Selenomonas ruminantium subsp. lactilytica TAM6421]
Swissprottr|Q8LDW9|XTH9_ARATH3.00E-159Xyloglucan endotransglucosylase/hydrolase protein 9 (Precursor)
trEMBLtr|V5NAT6|V5NAT6_PHAVU0Xyloglucan endotransglucosylase/hydrolase {ECO:0000256|RuleBase:RU361120}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold003744868051143-


Gene family

Gene familysubfamily
Carbohydrate-Active enzymes FamilyGH16


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
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Gene Ontology

biological_process

GO:0005975  carbohydrate metabolic process

GO:0006073  cellular glucan metabolic process


cellular_component

GO:0005618  cell wall

GO:0048046  apoplast


molecular_function

GO:0004553  hydrolase activity, hydrolyzing O-glycosyl compounds

GO:0016762  xyloglucan:xyloglucosyl transferase activity

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Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000374s00017948.1PF00722.16Glyco_hydro_16302067.90E-56
Glyur000374s00017948.1PF06955.7XET_C2412891.70E-16


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control31.544
SRR1783600control31.706
SRR1783602moderate drought stress28.878
SRR1811619moderate drought stress28.462

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain57.390
DRR006520Root Summer glycyrrhizin high producing strain56.252
DRR006521Root Winter glycyrrhizin high producing strain0.000
DRR006522Root Winter glycyrrhizin high producing strain0.000
DRR006523Root Summer glycyrrhizin low producing strain66.337
DRR006524Root Summer glycyrrhizin low producing strain65.308
DRR006525Leaf Summer glycyrrhizin high producing strain16.306
DRR006526Leaf Summer glycyrrhizin high producing strain16.794

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)85.046
SRR2868004Drought Stress(Tissue:root)66.572
SRR2967015Control (Tissue:root)86.089

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave69.372
SRR9715740Leave15.083
SRR9715741Leave28.029
SRR9715739Root69.724
SRR9715742Root51.072
SRR9715743Root55.765

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h20.511
SRR8749028MeJA induced 9h17.992
SRR8749029MeJA induced 9h12.450
SRR8749030Uninduced0.238
SRR8749031Uninduced0.222
SRR8749032Uninduced0.378

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root46.215
SRR8400027Control-Root65.279

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved