Gene detail information of Glyur000374s00017954.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT4G15210.10beta-amylase 5
NRO22585.10RecName: Full=Beta-amylase; AltName: Full=1,4-alpha-D-glucan maltohydrolase [Medicago sativa]
COGYP_004639885.12.00E-52thermophilic beta-amylase [Paenibacillus mucilaginosus KNP414]
Swissprottr|O22585|AMYB_MEDSA0Beta-amylase
trEMBLtr|A0A072UUL3|A0A072UUL3_MEDTR0Beta-amylase {ECO:0000256|RuleBase:RU000509}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold00374110736113815-


Gene family

Gene familysubfamily
Carbohydrate-Active enzymes FamilyGH14


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
----------


Gene Ontology

biological_process

GO:0000272  polysaccharide catabolic process

GO:0005975  carbohydrate metabolic process


molecular_function

GO:0016161  beta-amylase activity


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000374s00017954.1PF01373.12Glyco_hydro_14164353.40E-120


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control3204.704
SRR1783600control3217.226
SRR1783602moderate drought stress2381.205
SRR1811619moderate drought stress2363.783

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain902.794
DRR006520Root Summer glycyrrhizin high producing strain893.552
DRR006521Root Winter glycyrrhizin high producing strain84.328
DRR006522Root Winter glycyrrhizin high producing strain81.940
DRR006523Root Summer glycyrrhizin low producing strain247.176
DRR006524Root Summer glycyrrhizin low producing strain247.169
DRR006525Leaf Summer glycyrrhizin high producing strain18.797
DRR006526Leaf Summer glycyrrhizin high producing strain18.659

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)61.948
SRR2868004Drought Stress(Tissue:root)45.271
SRR2967015Control (Tissue:root)15.534

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave6.988
SRR9715740Leave6.582
SRR9715741Leave4.075
SRR9715739Root233.292
SRR9715742Root557.123
SRR9715743Root476.175

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h5.441
SRR8749028MeJA induced 9h5.270
SRR8749029MeJA induced 9h10.083
SRR8749030Uninduced4.374
SRR8749031Uninduced5.281
SRR8749032Uninduced3.384

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root1771.739
SRR8400027Control-Root2035.160

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved