Gene detail

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Gene detail information of Glyur000375s00022194.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G61480.1	0	Leucine-rich repeat protein kinase family protein
NR	XP_006587703.1	0	PREDICTED: leucine-rich repeat receptor-like protein kinase TDR-like [Glycine max]
COG	YP_004775215.1	2.00E-47	RHS repeat-associated core domain-containing protein [Cyclobacterium marinum DSM 745]
Swissprot	tr\|Q9FII5\|TDR_ARATH	0	Leucine-rich repeat receptor-like protein kinase TDR (Precursor)
trEMBL	tr\|I1L5P2\|I1L5P2_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA09G36460.1}

Sequence

Transcript Sequence

>Glyur000375s00022194.1
ATGAAACCTTTCCTTTTCTCCTTTCTCATCACATTCTCCTTCTTCTTTTGCTGCCTGCAAACACAGCTACCACTAGTTCTCTCTGCCACCACAACAACAACTACTCTGCCCCTCCAACTCATCACCCTCCTCTCCATAAAATCCTCCCTCTTAGACCCTCTCAACAATCTCCATGACTGGGACCCCACCTTCTCATCCAACTCCACTACTTACCAAGAAGACCACCCAACATGGTGTTCCTGGAGAGGCATCACTTGCCACCCAAAAACAGCTCAAATCACCACCCTAAACCTCTCCCACCTCAACCTCTCAGGCACAATCTCACCCCAAATCCGCTACCTATCATCAAGCCTAAACCACTTGAACCTCAGTGGGAACGACCTCAGTGGGAATTTCCAAGCAGCAATCTTCGAACTCACAGAGCTAAGAACGCTAGACATAAGCCACAACTCCTTCAACTCAACTTTCCCACCAGGGATATCAAAGCTCAAGTTCTTAAGAATCTTCAATGCCTACAGCAACAACTTCATAGGCCCACTACCCAAAGAGCTAATCAGGCTTCGGTTCCTAGAACAACTCAACCTCGGAGGAAGCTACTTCAAAGACAGAATCCCACCAGGCTATGGAACTCTCCATAGACTCAAGTTCCTACATTTAGCAGGCAATGCCTTGGAAGGTCCACTCCCACCTCAACTAGGCCTGTTAACAGAGCTACAGCACTTGGAAATCGGGTACAACCCATTCTCAGGAACAATCCCAATAGAACTCACAACTCTTCCCAATCTGAGATACCTTGACATCTCATCCACCAACATCACAGGCCAAGTGATCCCTGAGCTAGGGAACTTGACCATGCTGGAGACACTGCTACTCTTCAAGAATCGCCTAAGTGGAGAAATCCCATCAACCTTAGGGAAATTGAAGTCCCTGAAAGCACTTGATTTATCAGACAATGAACTCATGGGGTCAATTCCAACAGAGATAACAATGCTGAAGGAACTAAATGTTCTGAGCCTAATGGTGAACAAGCTAACAGGTGAGATACCACAGGGAATTGGGGAGCTTCCAAAACTTGACACGCTCTTCGTGTTCAACAACTCACTCAATGGTACACTACCGNCAAAACTCGGTTCCAACGGGTTACTCACGAAACTCGACGTGTCAACGAACTCACTCCAAGGTCCAATCCCAGTGAATGTGTGCAAAGGGCAAAAGCTGGTTAGGCTNATTCTCTTCAACAACAAACTCACCAACACACTCCCATTTTCACTTTCCAACTGCANCTCACTCGCTAGGGTTCGAATCCAAAACAACAACCTCAACGGTTCAATTCCACAAGCGCTCACGCTTCTCCCTAATTTAACGTTCCTCGACGTGAGCAACAACCATTTCAAAGGCGAAATTCCAAGGGAGTTAGGGAATAACCTTCAGTATTTGAATATCTCAGGAAACGCGTTTGGAAGCGCGTTGCCTAGTAACATATGGAACGCTAGCAACCTTGTGATTTTCTCCGCCGCAAGTTCGGGAATCACGGGTGAGATTCCTGATTTCATTGGTTGCCAAACGGTGTATAAGATCGAATTGCAGGGGAATTTACTCAACGGTAGCATACCTTGGGATATTGGTCACTGTCAGAAGCTGATTCTGTTGAATCTAAGTGGAAATTCCTTAACCGGAATCATCCCCTGGGAAATCTCGACGCTACCTTCAATCACCGACGTTGATCTCTCTCATAACTCCCTCACCGGAACAATACCTTCAAGCTTCAACAACTGCACAACGTTAGAGAACTTCAATGTCAGTTTCAACTCCCTCACCGGACCAATCCCTAACTCCGGCATCTTCCAAAGTCTTCATCCTTCTTCCTACTCCGGCAACAAAGGACTCTGCGGAAGCCTCCTCGCAAAACCGTGCGCCGCCGACGCGCTCGCCGCCGGTGAGAACGAGCTCGAGGTCCACCGTCAGCAGCCGAGAAAAACCGCCGGAGCAATCGTGTGGATAGTCGCGGCGGCGTTCGGAATCGGCCTCTTNGTTCTCGTCGCCGGGACAAGATGCTTCCACGCGAACTATAACCGTCGATTCGGAACCGGTAACGGCGTAGAGTTAGGGCCGTGGAANTTAACGGCGTTTCAGCGGTTGAACTTCACGGCGGAGGATGTGCTCGAGTGTTTGTCGATGTCGGATAAGATCCTTGGAATGGGGTCCACTGGAACAGTTTATAGGGCTGAGATGCCAGGTGGCGAGATCATAGCGGTTAAGAAGCTATGGGGGAAGCACAAGGAGAATAACAGTTTGATCAGACGGAGGAGAGGGGTTTTGGCTGAGGTGGACGTGTTGGGGAACGTGAGGCACAGGAACATCGTGAGGTTGTTAGGGTAATATGCTTACACACTTCAAGTTGATGAGAAGAGTGATATTTACAGCTATGGGGTGGTGTTGATGGAGATTTTAAGCGGAAAGCGTTCAGTGGATTCAGAATTTGGAGATGGGAATAGCATTGTGGATTGGGTTAGGTCTAAGATAAAGACCAAAGATGGAATTGATGATATATTGGATAAGAATGCAGGGGCAGGGTGCAGTTCAGTGAGGGAAGAGATGATACAAATGCTAAGAATTGCATTGCTTTGCACAAGTAGGAACCCAGCAGATAGGCCTTCCATGAGAGATGTTGTGTTGATGCTTCAAGAGGCTAAGCCCAAAAGGAAATTGCTTGATGTTGTAGGTCGATGTGGTAGTGATCACAATGTGGTTGGTGGTGGTGGAGGTGATATTCCATTGGCACAAAAGCCAACCATGGATAGCTAGTTAGTTAATTAATATGTTCATATGATTTGAAATGTTTTTTTTTTTTTTACTTTTTTTGGGCCGGGGATATTTTTCTTATTGTGGGGTGGGATTGGTATAGGAGAAAGTGATGATTTTTCTGTTTTTACTTTTCAATGGAATTTCTCAAGTGTTACTTTGTCCTAGTTTTTCTTCCCGTGTTATATATATTGTTATGTTATTATGACTCCTTGTTTGTTAATGCTTATAAATCAAA

Protein Sequence

Location information(JBrowse)

Scaffold	Start	End	Strand
Scaffold00375	106211	110671	-

Gene family

Gene family	subfamily
Protein Kinases Family	PPC:1.12.4

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006468 protein phosphorylation

molecular_function GO:0004672 protein kinase activity GO:0005515 protein binding GO:0005524 ATP binding GO:0016772 transferase activity, transferring phosphorus-containing groups

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000375s00022194.1	PF00560.28	LRR_1	142	163	0.27
Glyur000375s00022194.1	PF13516.1	LRR_6	259	281	0.16
Glyur000375s00022194.1	PF13516.1	LRR_6	451	474	0.14
Glyur000375s00022194.1	PF00560.28	LRR_1	475	496	0.33
Glyur000375s00022194.1	PF13855.1	LRR_8	524	581	1.50E-06
Glyur000375s00022194.1	PF00069.20	Pkinase	729	791	1.40E-06

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	44.010
SRR1783600	control	43.940
SRR1783602	moderate drought stress	37.416
SRR1811619	moderate drought stress	37.590

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	75.443
DRR006520	Root Summer glycyrrhizin high producing strain	72.828
DRR006521	Root Winter glycyrrhizin high producing strain	1.742
DRR006522	Root Winter glycyrrhizin high producing strain	1.730
DRR006523	Root Summer glycyrrhizin low producing strain	46.647
DRR006524	Root Summer glycyrrhizin low producing strain	46.593
DRR006525	Leaf Summer glycyrrhizin high producing strain	4.058
DRR006526	Leaf Summer glycyrrhizin high producing strain	4.115

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress(Tissue:root)	57.996
SRR2868004	Drought Stress(Tissue:root)	34.832
SRR2967015	Control (Tissue:root)	37.873

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leave	3.868
SRR9715740	Leave	2.827
SRR9715741	Leave	1.783
SRR9715739	Root	8.766
SRR9715742	Root	30.591
SRR9715743	Root	22.795

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	1.130
SRR8749028	MeJA induced 9h	1.329
SRR8749029	MeJA induced 9h	0.554
SRR8749030	Uninduced	1.969
SRR8749031	Uninduced	1.205
SRR8749032	Uninduced	0.912

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment-Root	45.955
SRR8400027	Control-Root	54.444