Gene detail information of Glyur000376s00018680.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT5G53300.42.00E-83ubiquitin-conjugating enzyme 10
NRNP_001236512.15.21E-106uncharacterized protein LOC100499824 [Glycine max]
COGYP_008797956.13.00E-25ubiquitin-conjugating enzyme E2-like protein [Candidatus Caldiarchaeum subterraneum]
Swissprottr|P35133|UBC10_ARATH2.00E-106Ubiquitin-conjugating enzyme E2 10
trEMBLtr|I3SJW8|I3SJW8_LOTJA2.00E-106Uncharacterized protein {ECO:0000313|EMBL:AFK40560.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold003765267156303-


Gene family

Gene familysubfamily
Ubiquitin FamilyUBC


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
----------


Gene Ontology

Not hits found.


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000376s00018680.1PF00179.21UQ_con51411.20E-53


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control896.415
SRR1783600control899.676
SRR1783602moderate drought stress1158.949
SRR1811619moderate drought stress1148.160

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain1479.339
DRR006520Root Summer glycyrrhizin high producing strain1461.909
DRR006521Root Winter glycyrrhizin high producing strain761.766
DRR006522Root Winter glycyrrhizin high producing strain739.655
DRR006523Root Summer glycyrrhizin low producing strain1850.763
DRR006524Root Summer glycyrrhizin low producing strain1858.677
DRR006525Leaf Summer glycyrrhizin high producing strain117.223
DRR006526Leaf Summer glycyrrhizin high producing strain114.583

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)341.507
SRR2868004Drought Stress(Tissue:root)470.447
SRR2967015Control (Tissue:root)530.529

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave138.463
SRR9715740Leave121.494
SRR9715741Leave197.981
SRR9715739Root534.586
SRR9715742Root562.362
SRR9715743Root565.154

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h545.183
SRR8749028MeJA induced 9h242.140
SRR8749029MeJA induced 9h506.642
SRR8749030Uninduced315.478
SRR8749031Uninduced272.129
SRR8749032Uninduced618.213

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root398.165
SRR8400027Control-Root408.270

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved