Gene detail information of Glyur000376s00018681.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT5G41480.19.00E-160Folylpolyglutamate synthetase family protein
NRKEH40416.10tetrahydrofolylpolyglutamate synthase [Medicago truncatula]
COGYP_001699560.13.00E-58folylpolyglutamate synthase [Lysinibacillus sphaericus C3-41]
Swissprottr|Q8W035|FPGS3_ARATH5.00E-29Folylpolyglutamate synthase {ECO:0000250|UniProtKB:Q05932, ECO:0000312|EMBL:CAC82079.1}
trEMBLtr|A0A072VFR4|A0A072VFR4_MEDTR0Tetrahydrofolylpolyglutamate synthase {ECO:0000313|EMBL:KEH40416.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold003765813665189+


Gene family

Gene familysubfamily
----


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K20457DHFS EC:6.3.2.12 Folate biosynthesis map00790


Gene Ontology

biological_process

GO:0009058  biosynthetic process

GO:0009396  folic acid-containing compound biosynthetic process


molecular_function

GO:0004326  tetrahydrofolylpolyglutamate synthase activity

GO:0005524  ATP binding

GO:0016874  ligase activity


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000376s00018681.1PF08245.7Mur_ligase_M903519.40E-10


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control2.164
SRR1783600control2.241
SRR1783602moderate drought stress2.559
SRR1811619moderate drought stress2.478

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain4.311
DRR006520Root Summer glycyrrhizin high producing strain4.226
DRR006521Root Winter glycyrrhizin high producing strain9.853
DRR006522Root Winter glycyrrhizin high producing strain9.286
DRR006523Root Summer glycyrrhizin low producing strain4.356
DRR006524Root Summer glycyrrhizin low producing strain4.564
DRR006525Leaf Summer glycyrrhizin high producing strain6.323
DRR006526Leaf Summer glycyrrhizin high producing strain6.680

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)8.033
SRR2868004Drought Stress(Tissue:root)8.238
SRR2967015Control (Tissue:root)7.719

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave6.358
SRR9715740Leave6.636
SRR9715741Leave7.126
SRR9715739Root0.753
SRR9715742Root1.888
SRR9715743Root1.797

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h4.472
SRR8749028MeJA induced 9h4.021
SRR8749029MeJA induced 9h2.792
SRR8749030Uninduced4.426
SRR8749031Uninduced1.750
SRR8749032Uninduced2.279

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root8.615
SRR8400027Control-Root7.282

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved