Gene detail information of Glyur000376s00018689.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT5G53170.10FTSH protease 11
NRXP_007161353.10hypothetical protein PHAVU_001G062000g [Phaseolus vulgaris]
COGNP_422020.15.00E-159cell division protein FtsH [Caulobacter crescentus CB15]
Swissprottr|Q9FGM0|FTSHB_ARATH0ATP-dependent zinc metalloprotease FTSH 11, chloroplastic/mitochondrial (Precursor)
trEMBLtr|V7CT36|V7CT36_PHAVU0Uncharacterized protein {ECO:0000313|EMBL:ESW33347.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold00376110144120355+


Gene family

Gene familysubfamily
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KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K08955YME1 EC:3.4.24.- Mitophagy - yeast map04139


Gene Ontology

biological_process

GO:0006508  proteolysis


cellular_component

GO:0016020  membrane


molecular_function

GO:0004222  metalloendopeptidase activity

GO:0005524  ATP binding

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Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000376s00018689.1PF00004.24AAA3985261.90E-40
Glyur000376s00018689.1PF01434.13Peptidase_M415887102.40E-51


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control13.436
SRR1783600control13.253
SRR1783602moderate drought stress14.206
SRR1811619moderate drought stress14.142

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain16.317
DRR006520Root Summer glycyrrhizin high producing strain16.174
DRR006521Root Winter glycyrrhizin high producing strain25.949
DRR006522Root Winter glycyrrhizin high producing strain25.017
DRR006523Root Summer glycyrrhizin low producing strain20.610
DRR006524Root Summer glycyrrhizin low producing strain20.349
DRR006525Leaf Summer glycyrrhizin high producing strain44.282
DRR006526Leaf Summer glycyrrhizin high producing strain45.149

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)22.362
SRR2868004Drought Stress(Tissue:root)26.571
SRR2967015Control (Tissue:root)31.533

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave37.953
SRR9715740Leave48.852
SRR9715741Leave41.307
SRR9715739Root6.259
SRR9715742Root18.832
SRR9715743Root16.129

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h17.306
SRR8749028MeJA induced 9h23.343
SRR8749029MeJA induced 9h17.500
SRR8749030Uninduced14.916
SRR8749031Uninduced21.372
SRR8749032Uninduced11.691

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root26.662
SRR8400027Control-Root26.535

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved