Gene detail information of Glyur000376s00018694.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT5G53120.51.00E-150spermidine synthase 3
NRXP_009378778.10PREDICTED: spermine synthase-like [Pyrus x bretschneideri]
COGYP_006760780.12.00E-81spermidine synthase SpeE2 [Desulfobacula toluolica Tol2]
Swissprottr|Q94BN2|SPSY_ARATH0Spermine synthase
trEMBLtr|I1KAP8|I1KAP8_SOYBN0Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA06G13210.5}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold00376141007143722-


Gene family

Gene familysubfamily
----


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K00797speE, SRM EC:2.5.1.16 Cysteine and methionine metabolism map00270
Arginine and proline metabolismmap00330
beta-Alanine metabolismmap00410
Glutathione metabolismmap00480


Gene Ontology

molecular_function

GO:0003824  catalytic activity



Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000376s00018694.1PF01564.12Spermine_synth653074.30E-86


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control0.322
SRR1783600control0.349
SRR1783602moderate drought stress0.386
SRR1811619moderate drought stress0.466

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain1.220
DRR006520Root Summer glycyrrhizin high producing strain0.971
DRR006521Root Winter glycyrrhizin high producing strain1.111
DRR006522Root Winter glycyrrhizin high producing strain1.472
DRR006523Root Summer glycyrrhizin low producing strain1.679
DRR006524Root Summer glycyrrhizin low producing strain1.780
DRR006525Leaf Summer glycyrrhizin high producing strain0.811
DRR006526Leaf Summer glycyrrhizin high producing strain0.625

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)4.248
SRR2868004Drought Stress(Tissue:root)3.700
SRR2967015Control (Tissue:root)4.429

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave1.863
SRR9715740Leave1.763
SRR9715741Leave1.557
SRR9715739Root0.049
SRR9715742Root0.341
SRR9715743Root0.458

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h0.111
SRR8749028MeJA induced 9h1.669
SRR8749029MeJA induced 9h1.100
SRR8749030Uninduced1.503
SRR8749031Uninduced0.602
SRR8749032Uninduced0.709

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root2.033
SRR8400027Control-Root2.091

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved