Gene detail information of Glyur000376s00018696.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT5G24400.15.00E-87NagB/RpiA/CoA transferase-like superfamily protein
NRKEH40400.12.04E-173glucosamine-6-phosphate isomerase/6-phosphogluconolactonase [Medicago truncatula]
COGYP_001321257.12.00E-516-phosphogluconolactonase [Alkaliphilus metalliredigens QYMF]
Swissprottr|Q69NG5|6PGL4_ORYSJ1.00E-114Probable 6-phosphogluconolactonase 4, chloroplastic (Precursor)
trEMBLtr|A0A072VQL3|A0A072VQL3_MEDTR8.00E-174Glucosamine-6-phosphate isomerase/6-phosphogluconolactonase {ECO:0000313|EMBL:KEH40400.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold00376146246152717+


Gene family

Gene familysubfamily
----


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K01057PGLS, pgl, devB EC:3.1.1.31 Carbon metabolism map01200
Pentose phosphate pathwaymap00030


Gene Ontology

biological_process

GO:0005975  carbohydrate metabolic process

GO:0006098  pentose-phosphate shunt


molecular_function

GO:0017057  6-phosphogluconolactonase activity


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000376s00018696.1PF01182.15Glucosamine_iso892753.30E-49
Glyur000376s00018696.1PF01182.15Glucosamine_iso3785802.70E-62


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control9.013
SRR1783600control8.919
SRR1783602moderate drought stress6.876
SRR1811619moderate drought stress6.685

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain26.746
DRR006520Root Summer glycyrrhizin high producing strain26.368
DRR006521Root Winter glycyrrhizin high producing strain0.166
DRR006522Root Winter glycyrrhizin high producing strain0.137
DRR006523Root Summer glycyrrhizin low producing strain28.636
DRR006524Root Summer glycyrrhizin low producing strain28.903
DRR006525Leaf Summer glycyrrhizin high producing strain9.786
DRR006526Leaf Summer glycyrrhizin high producing strain9.561

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)33.667
SRR2868004Drought Stress(Tissue:root)25.115
SRR2967015Control (Tissue:root)26.369

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave6.862
SRR9715740Leave0.447
SRR9715741Leave2.020
SRR9715739Root1.994
SRR9715742Root6.857
SRR9715743Root6.051

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h0.000
SRR8749028MeJA induced 9h0.093
SRR8749029MeJA induced 9h0.000
SRR8749030Uninduced0.081
SRR8749031Uninduced0.106
SRR8749032Uninduced0.015

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root12.568
SRR8400027Control-Root12.822

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved