Gene detail information of Glyur000376s00018697.2


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT5G59220.14.00E-57highly ABA-induced PP2C gene 1
NRXP_004498408.10PREDICTED: probable protein phosphatase 2C 51-like [Cicer arietinum]
COGYP_007067253.14.00E-13WD-40 repeat-containing protein [Calothrix sp. PCC 7507]
Swissprottr|Q5SN75|P2C08_ORYSJ1.00E-99Probable protein phosphatase 2C 8
trEMBLtr|Q9ZPL9|Q9ZPL9_LOTJA0Nodule-enhanced protein phosphatase type 2C {ECO:0000313|EMBL:AAD17804.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold00376153277164657-


Gene family

Gene familysubfamily
Ubiquitin FamilyDWD


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
----------


Gene Ontology

molecular_function

GO:0005515  protein binding



Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000376s00018697.2PF00400.27WD402362710.031
Glyur000376s00018697.2PF00400.27WD402863175.10E-08
Glyur000376s00018697.2PF00400.27WD404524790.017


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control5.088
SRR1783600control5.013
SRR1783602moderate drought stress6.964
SRR1811619moderate drought stress6.831

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain11.390
DRR006520Root Summer glycyrrhizin high producing strain11.708
DRR006521Root Winter glycyrrhizin high producing strain10.446
DRR006522Root Winter glycyrrhizin high producing strain10.091
DRR006523Root Summer glycyrrhizin low producing strain13.796
DRR006524Root Summer glycyrrhizin low producing strain13.840
DRR006525Leaf Summer glycyrrhizin high producing strain4.185
DRR006526Leaf Summer glycyrrhizin high producing strain4.189

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)14.334
SRR2868004Drought Stress(Tissue:root)14.200
SRR2967015Control (Tissue:root)14.974

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave6.824
SRR9715740Leave12.719
SRR9715741Leave10.418
SRR9715739Root11.769
SRR9715742Root9.711
SRR9715743Root10.377

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h20.704
SRR8749028MeJA induced 9h19.135
SRR8749029MeJA induced 9h16.985
SRR8749030Uninduced10.034
SRR8749031Uninduced7.103
SRR8749032Uninduced8.735

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root15.776
SRR8400027Control-Root12.901

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved