Gene detail information of Glyur000378s00022510.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT2G35430.15.00E-50Zinc finger C-x8-C-x5-C-x3-H type family protein
NRXP_004509736.16.33E-150PREDICTED: zinc finger CCCH domain-containing protein 12-like [Cicer arietinum]
Swissprottr|Q5PP65|C3H28_ARATH3.00E-63Zinc finger CCCH domain-containing protein 28
trEMBLtr|M5W9T6|M5W9T6_PRUPE2.00E-137Uncharacterized protein {ECO:0000313|EMBL:EMJ10512.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold003785166954680+


Gene family

Gene familysubfamily
Transcription Factors FamilyC3H


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
----------


Gene Ontology

molecular_function

GO:0046872  metal ion binding



Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000378s00022510.1PF00642.19zf-CCCH961209.50E-06
Glyur000378s00022510.1PF00642.19zf-CCCH2022272.20E-11


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control17.846
SRR1783600control18.457
SRR1783602moderate drought stress16.414
SRR1811619moderate drought stress17.574

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain27.038
DRR006520Root Summer glycyrrhizin high producing strain26.198
DRR006521Root Winter glycyrrhizin high producing strain18.560
DRR006522Root Winter glycyrrhizin high producing strain18.127
DRR006523Root Summer glycyrrhizin low producing strain13.789
DRR006524Root Summer glycyrrhizin low producing strain13.654
DRR006525Leaf Summer glycyrrhizin high producing strain15.046
DRR006526Leaf Summer glycyrrhizin high producing strain15.182

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)29.815
SRR2868004Drought Stress(Tissue:root)31.469
SRR2967015Control (Tissue:root)32.082

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave23.022
SRR9715740Leave25.431
SRR9715741Leave29.853
SRR9715739Root27.561
SRR9715742Root33.815
SRR9715743Root33.690

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h18.203
SRR8749028MeJA induced 9h13.561
SRR8749029MeJA induced 9h12.011
SRR8749030Uninduced12.819
SRR8749031Uninduced5.580
SRR8749032Uninduced6.917

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root31.993
SRR8400027Control-Root31.271

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved