Gene detail information of Glyur000378s00022512.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT4G17920.12.00E-44RING/U-box superfamily protein
NRXP_004509735.14.85E-129PREDICTED: RING-H2 finger protein ATL29-like [Cicer arietinum]
Swissprottr|O49691|ATL29_ARATH8.00E-53RING-H2 finger protein ATL29
trEMBLtr|G7KFV0|G7KFV0_MEDTR3.00E-125Anaphase-promoting complex subunit 11 RING-H2 finger protein {ECO:0000313|EMBL:AES99137.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold003785634457228+


Gene family

Gene familysubfamily
Ubiquitin FamilyRING


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
----------


Gene Ontology

molecular_function

GO:0005515  protein binding

GO:0008270  zinc ion binding



Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000378s00022512.1PF13639.1zf-RING_21071504.50E-14


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control0.206
SRR1783600control0.332
SRR1783602moderate drought stress0.129
SRR1811619moderate drought stress0.300

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain0.123
DRR006520Root Summer glycyrrhizin high producing strain0.240
DRR006521Root Winter glycyrrhizin high producing strain0.126
DRR006522Root Winter glycyrrhizin high producing strain0.123
DRR006523Root Summer glycyrrhizin low producing strain0.749
DRR006524Root Summer glycyrrhizin low producing strain0.495
DRR006525Leaf Summer glycyrrhizin high producing strain0.210
DRR006526Leaf Summer glycyrrhizin high producing strain0.210

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)0.286
SRR2868004Drought Stress(Tissue:root)0.051
SRR2967015Control (Tissue:root)0.058

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave0.075
SRR9715740Leave0.236
SRR9715741Leave0.025
SRR9715739Root0.056
SRR9715742Root0.000
SRR9715743Root0.067

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h0.430
SRR8749028MeJA induced 9h0.239
SRR8749029MeJA induced 9h0.240
SRR8749030Uninduced0.252
SRR8749031Uninduced0.000
SRR8749032Uninduced0.160

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root0.271
SRR8400027Control-Root0.214

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved