Gene detail information of Glyur000378s00022516.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G72210.1 | 3.00E-52 | basic helix-loop-helix (bHLH) DNA-binding superfamily protein |
| NR | KHN45285.1 | 2.54E-144 | Transcription factor bHLH71 [Glycine soja] |
| Swissprot | tr|Q9C7T4|BH096_ARATH | 3.00E-67 | Transcription factor bHLH96 |
| trEMBL | tr|I1KDQ1|I1KDQ1_SOYBN | 9.00E-145 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA06G35330.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00378 | 70396 | 73777 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | bHLH |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000378s00022516.1 | PF00010.21 | HLH | 112 | 163 | 4.70E-10 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.040 |
| SRR1783600 | control | 0.040 |
| SRR1783602 | moderate drought stress | 0.021 |
| SRR1811619 | moderate drought stress | 0.021 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.176 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.174 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 22.416 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 21.366 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.059 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.059 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 2.534 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 2.462 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 0.801 |
| SRR2868004 | Drought Stress(Tissue:root) | 0.426 |
| SRR2967015 | Control (Tissue:root) | 1.076 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 5.886 |
| SRR9715740 | Leave | 0.000 |
| SRR9715741 | Leave | 1.488 |
| SRR9715739 | Root | 0.000 |
| SRR9715742 | Root | 0.236 |
| SRR9715743 | Root | 0.100 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.000 |
| SRR8749028 | MeJA induced 9h | 0.036 |
| SRR8749029 | MeJA induced 9h | 0.033 |
| SRR8749030 | Uninduced | 0.000 |
| SRR8749031 | Uninduced | 0.184 |
| SRR8749032 | Uninduced | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 0.063 |
| SRR8400027 | Control-Root | 0.065 |