Gene detail information of Glyur000378s00022518.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G03550.1 | 3.00E-45 | RING/U-box superfamily protein |
| NR | AES95832.2 | 3.42E-118 | RING-H2 zinc finger protein [Medicago truncatula] |
| Swissprot | tr|Q9SRQ8|ATL51_ARATH | 9.00E-63 | RING-H2 finger protein ATL51 |
| trEMBL | tr|G7KDR5|G7KDR5_MEDTR | 1.00E-118 | RING-H2 zinc finger protein {ECO:0000313|EMBL:AES95832.2} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00378 | 76077 | 77156 | - |
Gene family
| Gene family | subfamily |
|---|---|
| Ubiquitin Family | RING |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000378s00022518.1 | PF13639.1 | zf-RING_2 | 148 | 191 | 3.30E-14 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 1.808 |
| SRR1783600 | control | 1.955 |
| SRR1783602 | moderate drought stress | 1.712 |
| SRR1811619 | moderate drought stress | 1.916 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 1.541 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 1.423 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.517 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.504 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.989 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 1.247 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 3.477 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 3.382 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 1.248 |
| SRR2868004 | Drought Stress(Tissue:root) | 0.771 |
| SRR2967015 | Control (Tissue:root) | 0.479 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 0.629 |
| SRR9715740 | Leave | 0.631 |
| SRR9715741 | Leave | 0.849 |
| SRR9715739 | Root | 0.250 |
| SRR9715742 | Root | 2.032 |
| SRR9715743 | Root | 1.258 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.000 |
| SRR8749028 | MeJA induced 9h | 0.000 |
| SRR8749029 | MeJA induced 9h | 0.000 |
| SRR8749030 | Uninduced | 0.000 |
| SRR8749031 | Uninduced | 0.000 |
| SRR8749032 | Uninduced | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 1.342 |
| SRR8400027 | Control-Root | 1.637 |