Gene detail information of Glyur000378s00022520.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT4G17900.1 | 8.00E-78 | PLATZ transcription factor family protein |
| NR | XP_004509731.1 | 1.31E-134 | PREDICTED: uncharacterized protein LOC101508712 [Cicer arietinum] |
| trEMBL | tr|G7KDS6|G7KDS6_MEDTR | 1.00E-133 | PLATZ transcription factor family protein {ECO:0000313|EMBL:AES95843.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00378 | 95682 | 98149 | - |
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | PLATZ |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene OntologyNot hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000378s00022520.1 | PF04640.9 | PLATZ | 70 | 141 | 5.30E-41 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 56.395 |
| SRR1783600 | control | 56.484 |
| SRR1783602 | moderate drought stress | 160.757 |
| SRR1811619 | moderate drought stress | 160.048 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 112.828 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 112.040 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 381.652 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 371.774 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 149.692 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 149.469 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 59.556 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 58.715 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 157.052 |
| SRR2868004 | Drought Stress(Tissue:root) | 280.068 |
| SRR2967015 | Control (Tissue:root) | 321.888 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 147.983 |
| SRR9715740 | Leave | 121.343 |
| SRR9715741 | Leave | 209.181 |
| SRR9715739 | Root | 30.206 |
| SRR9715742 | Root | 111.244 |
| SRR9715743 | Root | 95.861 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 88.551 |
| SRR8749028 | MeJA induced 9h | 207.713 |
| SRR8749029 | MeJA induced 9h | 140.713 |
| SRR8749030 | Uninduced | 91.191 |
| SRR8749031 | Uninduced | 340.164 |
| SRR8749032 | Uninduced | 232.942 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 134.025 |
| SRR8400027 | Control-Root | 90.528 |