Gene detail information of Glyur000379s00015019.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G52030.2 | 4.00E-117 | F-box family protein with WD40/YVTN repeat doamin |
| NR | XP_004514570.1 | 0 | PREDICTED: F-box/WD-40 repeat-containing protein At3g52030-like [Cicer arietinum] |
| Swissprot | tr|Q9SV01|FBW4_ARATH | 7.00E-151 | F-box/WD-40 repeat-containing protein At3g52030 |
| trEMBL | tr|I1LKG1|I1LKG1_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA11G16190.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00379 | 100839 | 105953 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Ubiquitin Family | F-box |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000379s00015019.1 | PF12937.2 | F-box-like | 43 | 76 | 2.80E-07 |
| Glyur000379s00015019.1 | PF00400.27 | WD40 | 129 | 159 | 0.1 |
| Glyur000379s00015019.1 | PF00400.27 | WD40 | 245 | 279 | 0.0014 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 7.003 |
| SRR1783600 | control | 7.054 |
| SRR1783602 | moderate drought stress | 9.434 |
| SRR1811619 | moderate drought stress | 9.365 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 11.004 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 10.455 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 9.999 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 9.903 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 11.077 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 10.884 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 6.377 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 6.471 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 12.469 |
| SRR2868004 | Drought Stress(Tissue:root) | 12.792 |
| SRR2967015 | Control (Tissue:root) | 13.262 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 6.762 |
| SRR9715740 | Leave | 9.191 |
| SRR9715741 | Leave | 9.449 |
| SRR9715739 | Root | 2.652 |
| SRR9715742 | Root | 4.893 |
| SRR9715743 | Root | 4.391 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 10.668 |
| SRR8749028 | MeJA induced 9h | 11.631 |
| SRR8749029 | MeJA induced 9h | 7.820 |
| SRR8749030 | Uninduced | 13.898 |
| SRR8749031 | Uninduced | 6.723 |
| SRR8749032 | Uninduced | 5.068 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 14.333 |
| SRR8400027 | Control-Root | 14.247 |