Gene detail information of Glyur000379s00015023.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G36890.1 | 3.00E-136 | beta glucosidase 42 |
| NR | KDO77121.1 | 0 | hypothetical protein CISIN_1g011145mg [Citrus sinensis] |
| COG | YP_004641773.1 | 6.00E-71 | protein BglA [Paenibacillus mucilaginosus KNP414] |
| Swissprot | tr|Q9FIW4|BGL42_ARATH | 4.00E-170 | Beta-glucosidase 42 |
| trEMBL | tr|A0A067GP79|A0A067GP79_CITSI | 0 | Uncharacterized protein {ECO:0000313|EMBL:KDO77121.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00379 | 115847 | 122606 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Carbohydrate-Active enzymes Family | GH1 |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| K01188 | E3.2.1.21 | EC:3.2.1.21 | Starch and sucrose metabolism | map00500 |
| Cyanoamino acid metabolism | map00460 | |||
| Phenylpropanoid biosynthesis | map00940 |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000379s00015023.1 | PF00232.13 | Glyco_hydro_1 | 63 | 189 | 1.10E-59 |
| Glyur000379s00015023.1 | PF00232.13 | Glyco_hydro_1 | 191 | 437 | 2.20E-71 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 39.460 |
| SRR1783600 | control | 39.626 |
| SRR1783602 | moderate drought stress | 16.577 |
| SRR1811619 | moderate drought stress | 16.656 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 36.882 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 35.918 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 19.829 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 19.534 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 20.624 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 20.676 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 9.956 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 9.840 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 58.488 |
| SRR2868004 | Drought Stress(Tissue:root) | 41.474 |
| SRR2967015 | Control (Tissue:root) | 38.588 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 11.847 |
| SRR9715740 | Leave | 7.512 |
| SRR9715741 | Leave | 10.237 |
| SRR9715739 | Root | 7.751 |
| SRR9715742 | Root | 22.470 |
| SRR9715743 | Root | 21.133 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 43.657 |
| SRR8749028 | MeJA induced 9h | 48.743 |
| SRR8749029 | MeJA induced 9h | 35.724 |
| SRR8749030 | Uninduced | 16.188 |
| SRR8749031 | Uninduced | 6.850 |
| SRR8749032 | Uninduced | 7.659 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 57.950 |
| SRR8400027 | Control-Root | 57.564 |