Gene detail information of Glyur000380s00017129.2


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT5G13960.15.00E-174SU(VAR)3-9 homolog 4
NRXP_004493077.10PREDICTED: histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH4-like [Cicer arietinum]
COGNP_295256.11.00E-21hypothetical protein DR_1533 [Deinococcus radiodurans R1]
Swissprottr|Q8GZB6|SUVH4_ARATH0Histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH4
trEMBLtr|V7CLH6|V7CLH6_PHAVU0Uncharacterized protein {ECO:0000313|EMBL:ESW29731.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold003801407227101+


Gene family

Gene familysubfamily
Transcription Factors FamilySET


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K11420EHMT EC:2.1.1.43 Lysine degradation map00310
Longevity regulating pathway - mammalmap04211


Gene Ontology

biological_process

GO:0016571  histone methylation

GO:0034968  histone lysine methylation


cellular_component

GO:0005634  nucleus


molecular_function

GO:0005515  protein binding

GO:0008270  zinc ion binding

GO:0018024  histone-lysine N-methyltransferase activity

GO:0042393  histone binding

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Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000380s00017129.2PF02182.12SAD_SRA2714254.60E-49
Glyur000380s00017129.2PF05033.11Pre-SET4915821.20E-12
Glyur000380s00017129.2PF00856.23SET6017391.80E-20


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control10.374
SRR1783600control10.464
SRR1783602moderate drought stress10.756
SRR1811619moderate drought stress10.923

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain15.122
DRR006520Root Summer glycyrrhizin high producing strain14.694
DRR006521Root Winter glycyrrhizin high producing strain6.014
DRR006522Root Winter glycyrrhizin high producing strain5.730
DRR006523Root Summer glycyrrhizin low producing strain12.398
DRR006524Root Summer glycyrrhizin low producing strain12.803
DRR006525Leaf Summer glycyrrhizin high producing strain5.548
DRR006526Leaf Summer glycyrrhizin high producing strain5.489

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)24.480
SRR2868004Drought Stress(Tissue:root)15.809
SRR2967015Control (Tissue:root)18.496

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave5.517
SRR9715740Leave6.790
SRR9715741Leave7.375
SRR9715739Root3.873
SRR9715742Root10.214
SRR9715743Root8.582

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h41.036
SRR8749028MeJA induced 9h26.872
SRR8749029MeJA induced 9h19.452
SRR8749030Uninduced2.627
SRR8749031Uninduced1.387
SRR8749032Uninduced3.280

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root22.364
SRR8400027Control-Root20.820

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved