Gene detail information of Glyur000380s00017132.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT5G13980.20Glycosyl hydrolase family 38 protein
NRAES80719.20glycoside hydrolase family 38 amino-terminal domain protein [Medicago truncatula]
COGYP_001535983.11.00E-06glycoside hydrolase family protein [Salinispora arenicola CNS-205]
Swissprottr|C0HJB3|MANA_CANEN0Alpha-mannosidase, light subunit {ECO:0000303|PubMed:24221485}
trEMBLtr|G7KX95|G7KX95_MEDTR0Alpha-mannosidase {ECO:0000256|RuleBase:RU361199}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold003803100361486+


Gene family

Gene familysubfamily
Carbohydrate-Active enzymes FamilyGH38


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K01191E3.2.1.24 EC:3.2.1.24 Other glycan degradation map00511


Gene Ontology

biological_process

GO:0005975  carbohydrate metabolic process

GO:0006013  mannose metabolic process


molecular_function

GO:0003824  catalytic activity

GO:0004553  hydrolase activity, hydrolyzing O-glycosyl compounds

GO:0004559  alpha-mannosidase activity

GO:0008270  zinc ion binding

GO:0015923  mannosidase activity

GO:0030246  carbohydrate binding


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000380s00017132.1PF01074.17Glyco_hydro_38373311.90E-71
Glyur000380s00017132.1PF09261.6Alpha-mann_mid3374107.20E-19
Glyur000380s00017132.1PF07748.8Glyco_hydro_38C4519231.20E-68
Glyur000380s00017132.1PF01074.17Glyco_hydro_3898813001.70E-86
Glyur000380s00017132.1PF09261.6Alpha-mann_mid130613706.30E-13
Glyur000380s00017132.1PF07748.8Glyco_hydro_38C143018963.40E-87


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control18.893
SRR1783600control19.290
SRR1783602moderate drought stress18.451
SRR1811619moderate drought stress18.990

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain18.898
DRR006520Root Summer glycyrrhizin high producing strain18.533
DRR006521Root Winter glycyrrhizin high producing strain7.964
DRR006522Root Winter glycyrrhizin high producing strain7.852
DRR006523Root Summer glycyrrhizin low producing strain16.694
DRR006524Root Summer glycyrrhizin low producing strain16.620
DRR006525Leaf Summer glycyrrhizin high producing strain10.756
DRR006526Leaf Summer glycyrrhizin high producing strain11.042

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)35.422
SRR2868004Drought Stress(Tissue:root)34.865
SRR2967015Control (Tissue:root)35.282

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave14.757
SRR9715740Leave15.635
SRR9715741Leave18.037
SRR9715739Root2.465
SRR9715742Root14.576
SRR9715743Root12.899

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h34.509
SRR8749028MeJA induced 9h27.699
SRR8749029MeJA induced 9h26.027
SRR8749030Uninduced11.887
SRR8749031Uninduced8.869
SRR8749032Uninduced10.900

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root30.689
SRR8400027Control-Root29.666

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved