Gene detail information of Glyur000380s00017136.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G26730.1 | 6.00E-164 | RING/U-box superfamily protein |
| NR | XP_003624500.1 | 0 | RING finger protein [Medicago truncatula] |
| Swissprot | tr|P93030|RMA2_ARATH | 9.00E-06 | E3 ubiquitin-protein ligase RMA2 |
| trEMBL | tr|G7KX94|G7KX94_MEDTR | 0 | RING finger protein {ECO:0000313|EMBL:AES80718.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00380 | 64111 | 72707 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Ubiquitin Family | RING |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000380s00017136.1 | PF13923.1 | zf-C3HC4_2 | 237 | 283 | 4.80E-06 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 45.854 |
| SRR1783600 | control | 46.276 |
| SRR1783602 | moderate drought stress | 47.103 |
| SRR1811619 | moderate drought stress | 46.815 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 31.594 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 31.466 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 57.122 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 55.679 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 29.979 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 29.231 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 26.779 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 26.609 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 42.072 |
| SRR2868004 | Drought Stress(Tissue:root) | 51.526 |
| SRR2967015 | Control (Tissue:root) | 47.923 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 33.290 |
| SRR9715740 | Leave | 39.910 |
| SRR9715741 | Leave | 37.587 |
| SRR9715739 | Root | 7.401 |
| SRR9715742 | Root | 38.303 |
| SRR9715743 | Root | 31.941 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 62.554 |
| SRR8749028 | MeJA induced 9h | 70.723 |
| SRR8749029 | MeJA induced 9h | 47.416 |
| SRR8749030 | Uninduced | 53.984 |
| SRR8749031 | Uninduced | 55.957 |
| SRR8749032 | Uninduced | 54.503 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 49.293 |
| SRR8400027 | Control-Root | 54.293 |