Gene detail information of Glyur000380s00017139.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT1G08660.10MALE GAMETOPHYTE DEFECTIVE 2
NRXP_004493073.10PREDICTED: CMP-N-acetylneuraminate-beta-galactosamide-alpha-2,3-sialyltransferase 2-like [Cicer arietinum]
trEMBLtr|K7MXM5|K7MXM5_SOYBN0Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA19G27546.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold0038098692105366+


Gene family

Gene familysubfamily
Carbohydrate-Active enzymes FamilyGT29


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
----------


Gene Ontology

biological_process

GO:0006486  protein glycosylation


molecular_function

GO:0008373  sialyltransferase activity


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000380s00017139.1PF00777.13Glyco_transf_291792641.10E-25
Glyur000380s00017139.1PF00777.13Glyco_transf_292733762.70E-12


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control13.907
SRR1783600control14.059
SRR1783602moderate drought stress11.070
SRR1811619moderate drought stress11.168

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain20.231
DRR006520Root Summer glycyrrhizin high producing strain19.960
DRR006521Root Winter glycyrrhizin high producing strain32.458
DRR006522Root Winter glycyrrhizin high producing strain31.805
DRR006523Root Summer glycyrrhizin low producing strain22.367
DRR006524Root Summer glycyrrhizin low producing strain22.416
DRR006525Leaf Summer glycyrrhizin high producing strain14.052
DRR006526Leaf Summer glycyrrhizin high producing strain14.061

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)29.445
SRR2868004Drought Stress(Tissue:root)24.005
SRR2967015Control (Tissue:root)25.176

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave12.154
SRR9715740Leave11.619
SRR9715741Leave11.702
SRR9715739Root4.138
SRR9715742Root14.256
SRR9715743Root12.591

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h34.155
SRR8749028MeJA induced 9h34.352
SRR8749029MeJA induced 9h39.731
SRR8749030Uninduced38.534
SRR8749031Uninduced51.608
SRR8749032Uninduced41.237

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root23.026
SRR8400027Control-Root23.193

© 2021 Resource Institute for Chinese & Ethnic Materia Medica ,Guizhou University of Traditional Chinese Medicine
State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved