Gene detail information of Glyur000381s00016136.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G26610.1 | 5.00E-39 | C2H2-like zinc finger protein |
| NR | XP_007158625.1 | 2.49E-121 | hypothetical protein PHAVU_002G168500g [Phaseolus vulgaris] |
| Swissprot | tr|Q9M202|ZAT9_ARATH | 2.00E-12 | Zinc finger protein ZAT9 |
| trEMBL | tr|V7CKF3|V7CKF3_PHAVU | 9.00E-122 | Uncharacterized protein {ECO:0000313|EMBL:ESW30619.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00381 | 102761 | 104095 | - |
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | C2H2 |
| EAR motif-containing Proteins | C2H2 |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000381s00016136.1 | PF13912.1 | zf-C2H2_6 | 6 | 30 | 0.0069 |
| Glyur000381s00016136.1 | PF13912.1 | zf-C2H2_6 | 103 | 125 | 0.00096 |
| Glyur000381s00016136.1 | PF13912.1 | zf-C2H2_6 | 382 | 404 | 1.90E-09 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.162 |
| SRR1783600 | control | 0.322 |
| SRR1783602 | moderate drought stress | 0.139 |
| SRR1811619 | moderate drought stress | 0.096 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.081 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.080 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.383 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.245 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.000 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 0.621 |
| SRR2868004 | Drought Stress(Tissue:root) | 0.404 |
| SRR2967015 | Control (Tissue:root) | 0.265 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 0.006 |
| SRR9715740 | Leave | 0.000 |
| SRR9715741 | Leave | 0.000 |
| SRR9715739 | Root | 0.000 |
| SRR9715742 | Root | 0.086 |
| SRR9715743 | Root | 0.095 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 4.589 |
| SRR8749028 | MeJA induced 9h | 2.740 |
| SRR8749029 | MeJA induced 9h | 2.301 |
| SRR8749030 | Uninduced | 0.451 |
| SRR8749031 | Uninduced | 1.027 |
| SRR8749032 | Uninduced | 1.121 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 0.287 |
| SRR8400027 | Control-Root | 0.579 |