Gene detail information of Glyur000381s00016146.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G18650.1 | 3.00E-28 | plasmodesmata callose-binding protein 3 |
| NR | XP_007157837.1 | 2.95E-85 | hypothetical protein PHAVU_002G102400g [Phaseolus vulgaris] |
| Swissprot | tr|Q9FZ86|PDCB3_ARATH | 8.00E-38 | PLASMODESMATA CALLOSE-BINDING PROTEIN 3 (Precursor) |
| trEMBL | tr|V7CLQ5|V7CLQ5_PHAVU | 1.00E-85 | Uncharacterized protein {ECO:0000313|EMBL:ESW29831.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00381 | 161659 | 163734 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Carbohydrate-Active enzymes Family | CBM43 |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene OntologyNot hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000381s00016146.1 | PF07983.8 | X8 | 21 | 90 | 2.60E-16 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 13.393 |
| SRR1783600 | control | 13.574 |
| SRR1783602 | moderate drought stress | 24.533 |
| SRR1811619 | moderate drought stress | 24.559 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 20.183 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 20.149 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 22.543 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 21.553 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 35.431 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 36.164 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 8.679 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 8.666 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 30.130 |
| SRR2868004 | Drought Stress(Tissue:root) | 29.307 |
| SRR2967015 | Control (Tissue:root) | 31.115 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 20.133 |
| SRR9715740 | Leave | 22.636 |
| SRR9715741 | Leave | 22.498 |
| SRR9715739 | Root | 14.347 |
| SRR9715742 | Root | 14.715 |
| SRR9715743 | Root | 15.006 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 52.093 |
| SRR8749028 | MeJA induced 9h | 40.981 |
| SRR8749029 | MeJA induced 9h | 54.167 |
| SRR8749030 | Uninduced | 131.344 |
| SRR8749031 | Uninduced | 84.797 |
| SRR8749032 | Uninduced | 77.992 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 21.859 |
| SRR8400027 | Control-Root | 19.532 |